RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 BMPR2Q13873 1038 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 MROH9Q5TGP6 573 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 EMBQ6PCB8 327 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 TAOK1Q7L7X3 1001 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 LINC01555Q8NAE3 123 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 OR9A1PQ8NGU1 263 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 OR2L8Q8NGY9 312 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 HMGCLL1Q8TB92 370 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 DENND1AQ8TEH3 1009 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 DCAKDQ8WVC6 231 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 ANKRD49Q8WVL7 239 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 ANKRD7Q92527 254 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 ZNF501Q96CX3 271 aaPredicted RBP11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 IL17FQ96PD4 163 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 DHRS4Q9BTZ2 278 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 PARD6BQ9BYG5 372 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 PITPNM3Q9BZ71 974 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 SOHLH2Q9NX45 425 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 ACTR10Q9NZ32 417 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 COPG2Q9UBF2 871 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 FETUBQ9UGM5 382 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 ADAMTS6Q9UKP5 1117 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 RAB21Q9UL25 225 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 OSGIN2Q9Y236 505 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 ABCA2Q9BZC7 2435 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 SLC9B1P1A6NJY1 282 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 A6NL46 340 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 CPNE3O75131 537 aaKnown RBP11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 SCRG1O75711 98 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 SYF2O95926 243 aaKnown RBP11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 SLC35E2BP0CK96 405 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 CCDC166P0CW27 439 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 UGT2B7P16662 529 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 GCAP28676 217 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 CRABP2P29373 138 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 PEBP1P30086 187 aaKnown RBP11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 HSD17B2P37059 387 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 SERPINB8P50452 374 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 KIR2DS3Q14952 304 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 ARHGAP19Q14CB8 494 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 GPR19Q15760 415 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 CYP2A13Q16696 494 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 PHKG1Q16816 387 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 RAPH1Q70E73 1250 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 CCDC91Q7Z6B0 441 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 CMC1Q7Z7K0 106 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 TMEM126BQ8IUX1 230 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 FLVCR1-AS1Q8TAF5 88 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 MCOLN3Q8TDD5 553 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 ADAMTS17Q8TE56 1095 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 DLG3Q92796 817 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 CAVIN3Q969G5 261 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 UBXN10Q96LJ8 280 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 PPM1MQ96MI6 270 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 LRFN5Q96NI6 719 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 OR2A14Q96R47 310 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 PKP4Q99569 1192 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 DERL2Q9GZP9 239 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 FANCEQ9HB96 536 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 PARVBQ9HBI1 364 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 RRAGDQ9NQL2 400 aaPredicted RBP11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 AGPAT4Q9NRZ5 378 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 SPHK1Q9NYA1 384 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 IKZF3Q9UKT9 509 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 PDE10AQ9Y233 779 aa11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 KLF2Q9Y5W3 355 aaPredicted RBP11.41□□□□□ -0.58
SQSTM1-206ENST00000466342 HEATR5BQ9P2D3 2071 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 CCDC88CQ9P219 2028 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 PABPN1LA6NDY0 278 aaKnown RBP11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 NPEPPSL1A6NEC2 478 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 ZNF839A8K0R7 811 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 ISM1B1AKI9 464 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 CDC7O00311 574 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 SLC16A8O95907 504 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 ALDOAP04075 364 aaKnown RBP11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 KLK3P07288 261 aaPredicted RBP11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 ENO2P09104 434 aaPredicted RBP11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 HIST1H2AGP0C0S8 130 aaPredicted RBP11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 ST6GAL1P15907 406 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 HIST1H2ADP20671 130 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 HSD17B3P37058 310 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 GLRBP48167 497 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 PNLIPRP1P54315 467 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 FBXO38Q6PIJ6 1188 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 ADGRD1Q6QNK2 874 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 SPESP1Q6UW49 350 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 SBSNQ6UWP8 590 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 ZNF517Q6ZMY9 492 aaPredicted RBP11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 MED25Q71SY5 747 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 ADAMTSL2Q86TH1 951 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 MMP21Q8N119 569 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 CNPY4Q8N129 248 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 TMEM102Q8N9M5 508 aaPredicted RBP11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 LMNTD1Q8N9Z9 388 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 ISL2Q96A47 359 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 SLC22A18Q96BI1 424 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 HIST1H2AHQ96KK5 128 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 CCDC138Q96M89 665 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 TRAPPC9Q96Q05 1148 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms