RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 TFEBP19484 476 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 GMPRP36959 345 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 CD97P48960 835 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 TBPL1P62380 186 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 ABATP80404 500 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 IRF9Q00978 393 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 DLG1Q12959 904 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 ICE2Q659A1 982 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 CAPN13Q6MZZ7 669 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-205ENST00000465238 KLC3Q6P597 504 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 FIGLAQ6QHK4 219 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 CLEC18BQ6UXF7 455 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 LRRC56Q8IYG6 542 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-205ENST00000465238 DSELQ8IZU8 1212 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 CLEC18CQ8NCF0 446 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 ISL2Q96A47 359 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 CLIP3Q96DZ5 547 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 TSNARE1Q96NA8 513 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 NLNQ9BYT8 704 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 CHRNA10Q9GZZ6 450 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 ALG9Q9H6U8 611 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 ACSS2Q9NR19 701 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 TBK1Q9UHD2 729 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 SERTAD3Q9UJW9 196 aa16.97■□□□□ 0.31
COL7A1-205ENST00000465238 TNRC6AQ8NDV7 1962 aaKnown RBP16.97■□□□□ 0.31
COL7A1-205ENST00000465238 ARGFXA6NJG6 315 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 TMEM150CB9EJG8 249 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 PDGFAP04085 211 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 RORAP35398 523 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 GRIA3P42263 894 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 MAGEA12P43365 314 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 HNMTP50135 292 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 PGDP52209 483 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 MLLT10P55197 1068 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 PRDX1Q06830 199 aaKnown RBP16.96■□□□□ 0.31
COL7A1-205ENST00000465238 IFFO1Q0D2I5 559 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 TGFBIQ15582 683 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 OR4D1Q15615 310 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 ZIC1Q15915 447 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 PRAMEF17Q5VTA0 474 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 PRAMEF13Q5VWM6 474 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 CPZQ66K79 652 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 TIFABQ6ZNK6 161 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 CDHR3Q6ZTQ4 885 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 ISCA2Q86U28 154 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 CENPLQ8N0S6 344 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-205ENST00000465238 ENDOVQ8N8Q3 282 aaKnown RBP16.96■□□□□ 0.31
COL7A1-205ENST00000465238 OR1L3Q8NH93 324 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 PTERQ96BW5 349 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 CABS1Q96KC9 395 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 DPH7Q9BTV6 452 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 SLC25A23Q9BV35 468 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 ING2Q9H160 280 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 ACTR5Q9H9F9 607 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-205ENST00000465238 FAM60AQ9NP50 221 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 MLXIPLQ9NP71 852 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 RRAGDQ9NQL2 400 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-205ENST00000465238 CD274Q9NZQ7 290 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 SNX7Q9UNH6 387 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 HEATR5BQ9P2D3 2071 aa16.96■□□□□ 0.31
COL7A1-205ENST00000465238 SPTAN1Q13813 2472 aaKnown RBP16.96■□□□□ 0.31
COL7A1-205ENST00000465238 CCDC189A1A4V9 331 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 NCF1BA6NI72 391 aaPredicted RBP16.95■□□□□ 0.3
COL7A1-205ENST00000465238 SMIM23A6NLE4 172 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 NCF1CA8MVU1 366 aaPredicted RBP16.95■□□□□ 0.3
COL7A1-205ENST00000465238 COL6A2P12110 1019 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 NCF1P14598 390 aaPredicted RBP16.95■□□□□ 0.3
COL7A1-205ENST00000465238 SLCO1A2P46721 670 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 ACAP2Q15057 778 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 ZC3H12BQ5HYM0 836 aaKnown RBP16.95■□□□□ 0.3
COL7A1-205ENST00000465238 CDKL4Q5MAI5 379 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 FCRL6Q6DN72 434 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 LCTLQ6UWM7 567 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 TCAIMQ8N3R3 496 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 DNAJC22Q8N4W6 341 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 OR56A3Q8NH54 315 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 ADAMTS17Q8TE56 1095 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 EXT2Q93063 718 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 PYCR2Q96C36 320 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 DPH2Q9BQC3 489 aaPredicted RBP16.95■□□□□ 0.3
COL7A1-205ENST00000465238 HAUS8Q9BT25 410 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 SGPP1Q9BX95 441 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 PCMTD2Q9NV79 361 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 TCFL5Q9UL49 500 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 PLCL2Q9UPR0 1127 aa16.95■□□□□ 0.3
COL7A1-205ENST00000465238 TLDC2A0PJX2 215 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 SYCE1LA8MT33 242 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 KERAO60938 352 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 HBQ1P09105 142 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 NUDT17P0C025 328 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 HRH2P25021 359 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 GLRBP48167 497 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 CCL11P51671 97 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 ITGA1P56199 1179 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 YBX1P67809 324 aaKnown RBP16.94■□□□□ 0.3
COL7A1-205ENST00000465238 CHAF1BQ13112 559 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 TSNAXIP1Q2TAA8 658 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 SULT1C3Q6IMI6 304 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 LCN10Q6JVE6 187 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 ADCK2Q7Z695 626 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms