RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 EFNA3P52797 238 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 EMP2P54851 167 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 TBPL1P62380 186 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 CSNK1G2P78368 415 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 NAE1Q13564 534 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 MORF4L2Q15014 288 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 EIF2S3LQ2VIR3 472 aaKnown RBP19.71■□□□□ 0.75
SDC1-205ENST00000447124 AGTRAPQ6RW13 159 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 KIAA0408Q6ZU52 694 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 RERGQ96A58 199 aaPredicted RBP19.71■□□□□ 0.75
SDC1-205ENST00000447124 LINGO1Q96FE5 620 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 CFAP36Q96G28 342 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 THOC3Q96J01 351 aaKnown RBP19.71■□□□□ 0.75
SDC1-205ENST00000447124 LHPPQ9H008 270 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 CCDC177Q9NQR7 707 aaPredicted RBP19.71■□□□□ 0.75
SDC1-205ENST00000447124 MAP10Q9P2G4 905 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 PYCARDQ9ULZ3 195 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 CHMP2BQ9UQN3 213 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 TEX264Q9Y6I9 313 aa19.71■□□□□ 0.75
SDC1-205ENST00000447124 SPTBN1Q01082 2364 aaKnown RBP19.71■□□□□ 0.75
SDC1-205ENST00000447124 SLC16A5O15375 505 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 TTI1O43156 1089 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 LCMT2O60294 686 aaKnown RBP19.7■□□□□ 0.74
SDC1-205ENST00000447124 SEMA7AO75326 666 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 KLHL18O94889 574 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 HPP00738 406 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 RGS4P49798 205 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 ITGA8P53708 1063 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 MAT1AQ00266 395 aaKnown RBP19.7■□□□□ 0.74
SDC1-205ENST00000447124 DR1Q01658 176 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 FAM53BQ14153 422 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 FHL5Q5TD97 284 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 HECTD2Q5U5R9 776 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 AGAP7PQ5VUJ5 663 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 STEAP4Q687X5 459 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 LRRC8EQ6NSJ5 796 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 SYDE1Q6ZW31 735 aaPredicted RBP19.7■□□□□ 0.74
SDC1-205ENST00000447124 GALNT7Q86SF2 657 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 IQCKQ8N0W5 287 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 PDIK1LQ8N165 341 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 TM9SF4Q92544 642 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 AGAP4Q96P64 663 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 OLFM1Q99784 485 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 SGPP1Q9BX95 441 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 ZNF160Q9HCG1 818 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 IKZF3Q9UKT9 509 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 NTNG1Q9Y2I2 539 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 VWA7Q9Y334 891 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 PCDHGA10Q9Y5H3 936 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 SAR1BQ9Y6B6 198 aa19.7■□□□□ 0.74
SDC1-205ENST00000447124 NUP210LQ5VU65 1888 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 KCNE1BA0A087WTH5 132 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 IDSB3KWA1 339 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 TXNDC9O14530 226 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 COX6A1P12074 109 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 ACPPP15309 386 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 NPPBP16860 134 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 HRH2P25021 359 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 VARSP26640 1264 aaKnown RBP19.69■□□□□ 0.74
SDC1-205ENST00000447124 GLRBP48167 497 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 FAAH2Q6GMR7 532 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 TMEM207Q6UWW9 146 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 ZC3H7AQ8IWR0 971 aaKnown RBP19.69■□□□□ 0.74
SDC1-205ENST00000447124 MYO1HQ8N1T3 1032 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 PSMF1Q92530 271 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 ALKBH8Q96BT7 664 aaKnown RBP19.69■□□□□ 0.74
SDC1-205ENST00000447124 TM4SF19Q96DZ7 209 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 PDLIM2Q96JY6 352 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 BARD1Q99728 777 aaKnown RBP19.69■□□□□ 0.74
SDC1-205ENST00000447124 TGIF2Q9GZN2 237 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 DRC3Q9H069 523 aa19.69■□□□□ 0.74
SDC1-205ENST00000447124 ILKAPQ9H0C8 392 aaPredicted RBP19.69■□□□□ 0.74
SDC1-205ENST00000447124 PPANQ9NQ55 473 aaKnown RBP19.69■□□□□ 0.74
SDC1-205ENST00000447124 FEZF1A0PJY2 475 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 MAP2K7O14733 419 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 JRKO75564 520 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 CBX6O95503 412 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 RNF224P0DH78 156 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 FDXRP22570 491 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 SP140Q13342 867 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 NDUFAF7Q7L592 441 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 PRSS41Q7RTY9 318 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 GPATCH11Q8N954 259 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 OR9A4Q8NGU2 314 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 GABPB2Q8TAK5 448 aaPredicted RBP19.68■□□□□ 0.74
SDC1-205ENST00000447124 DNAJB14Q8TBM8 379 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 VPS50Q96JG6 964 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 NAPGQ99747 312 aaPredicted RBP19.68■□□□□ 0.74
SDC1-205ENST00000447124 WDR77Q9BQA1 342 aaPredicted RBP19.68■□□□□ 0.74
SDC1-205ENST00000447124 PCBD2Q9H0N5 130 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 MKKSQ9NPJ1 570 aaPredicted RBP19.68■□□□□ 0.74
SDC1-205ENST00000447124 COPG1Q9Y678 874 aaKnown RBP19.68■□□□□ 0.74
SDC1-205ENST00000447124 UTP20O75691 2785 aaKnown RBP19.68■□□□□ 0.74
SDC1-205ENST00000447124 POLEQ07864 2286 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 SCN3AQ9NY46 2000 aa19.68■□□□□ 0.74
SDC1-205ENST00000447124 A0A1W2PQ72 361 aa19.67■□□□□ 0.74
SDC1-205ENST00000447124 PRPF4O43172 522 aaKnown RBP eCLIP19.67■□□□□ 0.742e-7■■□□□ 13.9
SDC1-205ENST00000447124 SEC31AO94979 1220 aaKnown RBP19.67■□□□□ 0.74
SDC1-205ENST00000447124 BMP10O95393 424 aa19.67■□□□□ 0.74
SDC1-205ENST00000447124 HEXBP07686 556 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms