RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CCR10P46092 362 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 CLDN6P56747 220 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 RPS15AP62244 130 aaKnown RBP15.13■□□□□ 0.01
USP40-206ENST00000443711 REEP5Q00765 189 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 MEF2AQ02078 507 aaPredicted RBP15.13■□□□□ 0.01
USP40-206ENST00000443711 GALNT1Q10472 559 aaPredicted RBP15.13■□□□□ 0.01
USP40-206ENST00000443711 SLBPQ14493 270 aaKnown RBP eCLIP15.13■□□□□ 0.01
USP40-206ENST00000443711 C16orf72Q14CZ0 275 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 RBBP5Q15291 538 aaKnown RBP15.13■□□□□ 0.01
USP40-206ENST00000443711 ARL13AQ5H913 290 aaPredicted RBP15.13■□□□□ 0.01
USP40-206ENST00000443711 GRHL2Q6ISB3 625 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 FBXO42Q6P3S6 717 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 ZNF75CPQ92670 426 aaPredicted RBP15.13■□□□□ 0.01
USP40-206ENST00000443711 UBE2E3Q969T4 207 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 THAP11Q96EK4 314 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 LIN37Q96GY3 246 aaPredicted RBP15.13■□□□□ 0.01
USP40-206ENST00000443711 ZFYVE21Q9BQ24 234 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 SARGQ9BW04 601 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 TRPS1Q9UHF7 1281 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 PILRAQ9UKJ1 303 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 PLCL2Q9UPR0 1127 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 RNF11Q9Y3C5 154 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 KIF26BQ2KJY2 2108 aa15.13■□□□□ 0.01
USP40-206ENST00000443711 KCNE1BA0A087WTH5 132 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 A0A0J9YVX5 310 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 FEZF1A0PJY2 475 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 UBFD1O14562 309 aaKnown RBP15.12■□□□□ 0.01
USP40-206ENST00000443711 KLF11O14901 512 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 OR1F1O43749 312 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 OR4F21O95013 312 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 ESRRBO95718 433 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 ENO1P06733 434 aaKnown RBP15.12■□□□□ 0.01
USP40-206ENST00000443711 HGFP14210 728 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 CD22P20273 847 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 SLC1A6P48664 564 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 ERVPABLB-1P60509 514 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 ABCE1P61221 599 aaKnown RBP15.12■□□□□ 0.01
USP40-206ENST00000443711 SH3BP2P78314 561 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 ACY1Q03154 408 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 BST1Q10588 318 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 GGTA1PQ4G0N0 100 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 MED27Q6P2C8 311 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 TMIGD1Q6UXZ0 262 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 RNF44Q7L0R7 432 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 SYVN1Q86TM6 617 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 PLD3Q8IV08 490 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 MCATQ8IVS2 390 aaKnown RBP15.12■□□□□ 0.01
USP40-206ENST00000443711 HOMEZQ8IX15 550 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 LSMEM2Q8N112 164 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 MFSD9Q8NBP5 474 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 ZNF740Q8NDX6 193 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 LRRC8CQ8TDW0 803 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 AGAP11Q8TF27 550 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 CKAP2Q8WWK9 683 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 N4BP2L2Q92802 583 aaPredicted RBP15.12■□□□□ 0.01
USP40-206ENST00000443711 REPS1Q96D71 796 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 CDK15Q96Q40 435 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 CMKLR1Q99788 373 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 SPNS1Q9H2V7 528 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 PCDHGA11Q9Y5H2 935 aa15.12■□□□□ 0.01
USP40-206ENST00000443711 DMXL1Q9Y485 3027 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 CCDC187A0A096LP49 1063 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 A0A1B0GTL3 188 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 LCMT2O60294 686 aaKnown RBP15.11■□□□□ 0.01
USP40-206ENST00000443711 NRP2O60462 931 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 SRPX2O60687 465 aaPredicted RBP15.11■□□□□ 0.01
USP40-206ENST00000443711 HSPA4LO95757 839 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 MSL3P1P0C860 447 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 FOLR1P15328 257 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 AHRP35869 848 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 SCTRP47872 440 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 GABRA4P48169 554 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 TARDBPQ13148 414 aaKnown RBP eCLIP15.11■□□□□ 0.01
USP40-206ENST00000443711 EIF3IQ13347 325 aaKnown RBP15.11■□□□□ 0.01
USP40-206ENST00000443711 KCNAB1Q14722 419 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 CPSF6Q16630 551 aaKnown RBP eCLIP15.11■□□□□ 0.01
USP40-206ENST00000443711 CES4AQ5XG92 561 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 TTC19Q6DKK2 380 aaPredicted RBP15.11■□□□□ 0.01
USP40-206ENST00000443711 LETMD1Q6P1Q0 360 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 CYB5D1Q6P9G0 228 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 RAB11FIP2Q7L804 512 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 TMPRSS7Q7RTY8 843 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 CUZD1Q86UP6 607 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 TTLQ8NG68 377 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 METTL6Q8TCB7 284 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 RERGQ96A58 199 aaPredicted RBP15.11■□□□□ 0.01
USP40-206ENST00000443711 MAGEB18Q96M61 343 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 SLC29A3Q9BZD2 475 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 SHCBP1LQ9BZQ2 653 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 FANCEQ9HB96 536 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 FGF21Q9NSA1 209 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 THAP1Q9NVV9 213 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 ZNF225Q9UK10 706 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 ZNF490Q9ULM2 529 aaPredicted RBP15.11■□□□□ 0.01
USP40-206ENST00000443711 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.11■□□□□ 0.01
USP40-206ENST00000443711 PCDHGA4Q9Y5G9 962 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 ADAMTS20P59510 1910 aa15.11■□□□□ 0.01
USP40-206ENST00000443711 ANKDD1BA6NHY2 528 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 EFCAB7A8K855 629 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 H0YIV9 168 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms