RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 TJP3O95049 919 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 MAT1AQ00266 395 aaKnown RBP15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 HSF1Q00613 529 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 TFF3Q07654 80 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 CDH17Q12864 832 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 ZNF425Q6IV72 752 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 CAVIN1Q6NZI2 390 aaKnown RBP15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 C3P1Q6ZMU1 363 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 LANCL3Q6ZV70 420 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 TGIF2LYQ8IUE0 185 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 FAM71DQ8N9W8 422 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 OR52K1Q8NGK4 314 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 OR6P1Q8NGX9 317 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 LILRB4Q8NHJ6 448 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 ZNF778Q96MU6 729 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 FOPNLQ96NB1 174 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 FOXC2Q99958 501 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 ACAT2Q9BWD1 397 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 P2RY12Q9H244 342 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 MMP25Q9NPA2 562 aa15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 NPDC1Q9NQX5 325 aaPredicted RBP15.79■□□□□ 0.12
CHCHD3-202ENST00000423635 MAP1AP78559 2803 aaPredicted RBP15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 MAN1A2O60476 641 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 MATN4O95460 622 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 ADRA1DP25100 572 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 MAGEA1P43355 309 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 AVPR1BP47901 424 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 IST1P53990 364 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 PRDX1Q06830 199 aaKnown RBP15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 EXT1Q16394 746 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 AARS2Q5JTZ9 985 aaKnown RBP15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 RNFT1Q5M7Z0 435 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 PCGF5Q86SE9 256 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 DMRTC2Q8IXT2 367 aaPredicted RBP15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 LGI4Q8N135 537 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 ASB5Q8WWX0 329 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 PEX13Q92968 403 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 RERGQ96A58 199 aaPredicted RBP15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 OLFM1Q99784 485 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 UTP6Q9NYH9 597 aaKnown RBP15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 HCFC1P51610 2035 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 HEATR5BQ9P2D3 2071 aa15.78■□□□□ 0.12
CHCHD3-202ENST00000423635 GABRR3A8MPY1 467 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 MFAP3LO75121 409 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 EZRP15311 586 aaKnown RBP15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 AGTR2P50052 363 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 PTK6Q13882 451 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 NDUFA9Q16795 377 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 PTRHD1Q6GMV3 140 aaKnown RBP15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 TMEM211Q6ICI0 200 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 OTOAQ7RTW8 1153 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 ANKRD37Q7Z713 158 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 LDB1Q86U70 411 aaPredicted RBP15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 MARVELD2Q8N4S9 558 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 OR9A1PQ8NGU1 263 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 SKA2Q8WVK7 121 aaPredicted RBP15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 SMPDL3AQ92484 453 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 LRFN1Q9P244 771 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 KCNN3Q9UGI6 736 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 ANAPC5Q9UJX4 755 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 RUVBL2Q9Y230 463 aaKnown RBP15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 HRH3Q9Y5N1 445 aa15.77■□□□□ 0.12
CHCHD3-202ENST00000423635 A0A1B0GTL3 188 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 ERI2A8K979 691 aaKnown RBP15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 P2RX6O15547 441 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 TOXO94900 526 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 NSA2O95478 260 aaKnown RBP15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 GAS8O95995 478 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 HOXD4P09016 255 aaPredicted RBP15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 TPM1P09493 284 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 ZNF24P17028 368 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 RPS3P23396 243 aaKnown RBP eCLIP15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 MSX1P28360 303 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 TTPAP49638 278 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 ST13P50502 369 aaKnown RBP15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 GDF10P55107 478 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 SNRPNP63162 240 aaKnown RBP15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 PRAMEP78395 509 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 OC90Q02509 493 aaPredicted RBP15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 ARHGAP19Q14CB8 494 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 MINDY4Q4G0A6 757 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 ANKRD20A4Q4UJ75 823 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 CES4AQ5XG92 561 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 AADACL2Q6P093 401 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 SUSD1Q6UWL2 747 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 SLC5A8Q8N695 610 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 CHDHQ8NE62 594 aaPredicted RBP15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 FAM57AQ8TBR7 257 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 NINJ1Q92982 152 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 ZNF559Q9BR84 538 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 TRIM45Q9H8W5 580 aaPredicted RBP15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 GNPTGQ9UJJ9 305 aa15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 R3HDM2Q9Y2K5 976 aaKnown RBP15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 INTS1Q8N201 2190 aaKnown RBP15.76■□□□□ 0.11
CHCHD3-202ENST00000423635 ACANP16112 2415 aa15.75■□□□□ 0.11
CHCHD3-202ENST00000423635 NME2P1O60361 137 aa15.75■□□□□ 0.11
CHCHD3-202ENST00000423635 NME2P22392 152 aa15.75■□□□□ 0.11
CHCHD3-202ENST00000423635 CHRNB4P30926 498 aa15.75■□□□□ 0.11
CHCHD3-202ENST00000423635 RPA3P35244 121 aaPredicted RBP15.75■□□□□ 0.11
CHCHD3-202ENST00000423635 PTGS2P35354 604 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms