RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CHMP24386 653 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 NRLP54845 237 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 NOMO3P69849 1222 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 PSPHP78330 225 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 PLEKHG6Q3KR16 790 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 RBM20Q5T481 1227 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 MBLAC2Q68D91 279 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 REP15Q6BDI9 236 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SPPL2CQ8IUH8 684 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 OR8H1Q8NGG4 311 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 C9orf43Q8TAL5 461 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SPOCK2Q92563 424 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SLC7A6OSQ96CW6 309 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ARL5BQ96KC2 179 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 USP29Q9HBJ7 922 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ERVK-5Q9HDB9 667 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF69Q9UC07 566 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SEC14L4Q9UDX3 406 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 GPR160Q9UJ42 338 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 FBXW11Q9UKB1 542 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 PCDHGA10Q9Y5H3 936 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 IRS2Q9Y4H2 1338 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 LOC102723532A0A0G2JNH3 316 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 hCG_1807616A0A1W2PRN6 198 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 GPR89AB7ZAQ6 455 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ARVCFO00192 962 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 KHNYNO15037 678 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SLC22A2O15244 555 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 GPR89BP0CG08 455 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 GSTT2P0CG29 244 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 CSKP41240 450 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 CLCNKAP51800 687 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 S100A10P60903 97 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 DSC2Q02487 901 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 AUHQ13825 339 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 PTPN20Q4JDL3 420 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 C15orf52Q6ZUT6 534 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 OR8H3Q8N146 312 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 PQLC1Q8N2U9 271 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 MND1Q9BWT6 205 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 POLR2J3Q9H1A7 115 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 EIF2B3Q9NR50 452 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF224Q9NZL3 707 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 TNFRSF10DQ9UBN6 386 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 TESMINQ9Y4I5 508 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 A0A1W2PRU2 124 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 GNB5O14775 395 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 VNN2O95498 520 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 APBB3O95704 486 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ADRB2P07550 413 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 DSTNP60981 165 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ST3GAL3Q11203 375 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 AIMP2Q13155 320 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 PON3Q15166 354 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 TIGD6Q17RP2 521 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 RBM48Q5RL73 367 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SLC2A7Q6PXP3 512 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 POC1BQ8TC44 478 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 FOXJ1Q92949 421 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 RPL10LQ96L21 214 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 GFM1Q96RP9 751 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 LACRTQ9GZZ8 138 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SYT4Q9H2B2 425 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 KCNIP1Q9NZI2 227 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 INPPL1O15357 1258 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 BPGMP07738 259 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 PSKH1P11801 424 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ATP1B2P14415 290 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 TAL1P17542 331 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 HNRNPDQ14103 355 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ABHD15Q6UXT9 468 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 FRMD7Q6ZUT3 714 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 TMEM151BQ8IW70 566 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 TRMT10AQ8TBZ6 339 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 BPIFB1Q8TDL5 484 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 DAZLQ92904 295 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 NODALQ96S42 347 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 MAPKAP1Q9BPZ7 522 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 NUDT15Q9NV35 164 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 FAM237AA0A1B0GTK4 181 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ZSCAN5BA6NJL1 495 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 CXCR6O00574 342 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ERI3O43414 337 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 BCAS2O75934 225 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 JUPP14923 745 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 GSTM2P28161 218 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 LILRA4P59901 499 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 RPL7AP62424 266 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 FAM174BQ3ZCQ3 159 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 C10orf62Q5T681 223 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 RPL13AP3Q6NVV1 102 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 LANCL3Q6ZV70 420 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 AMIGO2Q86SJ2 522 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SLC15A3Q8IY34 581 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 HPS1Q92902 700 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SNX27Q96L92 541 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ZFP3Q96NJ6 502 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 NECTIN4Q96NY8 510 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 MTERF1Q99551 399 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 DDX4Q9NQI0 724 aaKnown RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms