RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 OR2A5Q96R48 311 aa11.93□□□□□ -0.5
SKA1-203ENST00000417656 CCNL2Q96S94 520 aaPredicted RBP11.93□□□□□ -0.5
SKA1-203ENST00000417656 NDC1Q9BTX1 674 aa11.93□□□□□ -0.5
SKA1-203ENST00000417656 CNOT10Q9H9A5 744 aaKnown RBP11.93□□□□□ -0.5
SKA1-203ENST00000417656 AKIRIN1Q9H9L7 192 aaPredicted RBP11.93□□□□□ -0.5
SKA1-203ENST00000417656 GPN2Q9H9Y4 310 aaPredicted RBP11.93□□□□□ -0.5
SKA1-203ENST00000417656 PELI2Q9HAT8 420 aa11.93□□□□□ -0.5
SKA1-203ENST00000417656 LHX9Q9NQ69 397 aa11.93□□□□□ -0.5
SKA1-203ENST00000417656 DNAJC11Q9NVH1 559 aa11.93□□□□□ -0.5
SKA1-203ENST00000417656 CROTQ9UKG9 612 aa11.93□□□□□ -0.5
SKA1-203ENST00000417656 SRPK3Q9UPE1 567 aa11.93□□□□□ -0.5
SKA1-203ENST00000417656 AP1M2Q9Y6Q5 423 aa11.93□□□□□ -0.5
SKA1-203ENST00000417656 PKD1L2Q7Z442 2459 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 A0A1W2PPM1 405 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 TLDC2A0PJX2 215 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 FEZF1A0PJY2 475 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 CCDC189A1A4V9 331 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 MEN1O00255 615 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 SRPX2O60687 465 aaPredicted RBP11.92□□□□□ -0.5
SKA1-203ENST00000417656 CDH16O75309 829 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 STK16O75716 305 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 MED26O95402 600 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 TUBBP07437 444 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 HBQ1P09105 142 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 KRT15P19012 456 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 VARSP26640 1264 aaKnown RBP11.92□□□□□ -0.5
SKA1-203ENST00000417656 DLSTP36957 453 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 RPS15AP62244 130 aaKnown RBP11.92□□□□□ -0.5
SKA1-203ENST00000417656 REEP5Q00765 189 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 RELAQ04206 551 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 SETDB1Q15047 1291 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 RASA2Q15283 850 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 PDK4Q16654 411 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 PFKFB4Q16877 469 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 HKDC1Q2TB90 917 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 WASHC2DQ5SRD0 308 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 ZNF385CQ66K41 422 aaPredicted RBP11.92□□□□□ -0.5
SKA1-203ENST00000417656 LCN10Q6JVE6 187 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 RHBDD2Q6NTF9 364 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 FAM199XQ6PEV8 388 aaPredicted RBP11.92□□□□□ -0.5
SKA1-203ENST00000417656 NXPE4Q6UWF7 544 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 FAM198BQ6UWH4 519 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 VN1R4Q7Z5H5 301 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 DTWD1Q8N5C7 304 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 METTL27Q8N6F8 245 aaPredicted RBP11.92□□□□□ -0.5
SKA1-203ENST00000417656 ZNF740Q8NDX6 193 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 ACMSDQ8TDX5 336 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 RERGQ96A58 199 aaPredicted RBP11.92□□□□□ -0.5
SKA1-203ENST00000417656 KIAA1143Q96AT1 154 aaPredicted RBP11.92□□□□□ -0.5
SKA1-203ENST00000417656 C10orf90Q96M02 699 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 LRFN5Q96NI6 719 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 RUFY1Q96T51 708 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 CD244Q9BZW8 370 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 CHST8Q9H2A9 424 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 CPNE5Q9HCH3 593 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 CUTCQ9NTM9 273 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 TXLNGQ9NUQ3 528 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 PLAAQ9Y263 795 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 RUVBL1Q9Y265 456 aaKnown RBP11.92□□□□□ -0.5
SKA1-203ENST00000417656 PCDHGA4Q9Y5G9 962 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 KCNE2Q9Y6J6 123 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 EPG5Q9HCE0 2579 aa11.92□□□□□ -0.5
SKA1-203ENST00000417656 ZZEF1O43149 2961 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 A0A1B0GX78 115 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 TRBC2A0A5B9 178 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 HYKKA2RU49 373 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 FITM1A5D6W6 292 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 LRRC14BA6NHZ5 514 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 MAP2K7O14733 419 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 KLK8O60259 260 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 RBP1P09455 135 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 CCNYL3P0C7X3 344 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 EPORP19235 508 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 F8A1P23610 371 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 GRK3P35626 688 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 ALDH18A1P54886 795 aaKnown RBP11.91□□□□□ -0.5
SKA1-203ENST00000417656 TMPRSS3P57727 454 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 DNASE1L3Q13609 305 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 SLBPQ14493 270 aaKnown RBP eCLIP11.91□□□□□ -0.5
SKA1-203ENST00000417656 SLC9A5Q14940 896 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 COL28A1Q2UY09 1125 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 PRTGQ2VWP7 1150 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 SLCO4C1Q6ZQN7 724 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 TTLL10Q6ZVT0 673 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 RIBC1Q8N443 379 aaPredicted RBP11.91□□□□□ -0.5
SKA1-203ENST00000417656 PTGR2Q8N8N7 351 aaPredicted RBP11.91□□□□□ -0.5
SKA1-203ENST00000417656 OR4K1Q8NGD4 311 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 PROKR1Q8TCW9 393 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 GBP5Q96PP8 586 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 MACROD1Q9BQ69 325 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 MRPL57Q9BQC6 102 aaKnown RBP11.91□□□□□ -0.5
SKA1-203ENST00000417656 MRPL46Q9H2W6 279 aaKnown RBP11.91□□□□□ -0.5
SKA1-203ENST00000417656 ENAMQ9NRM1 1142 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 GPRC5BQ9NZH0 403 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 TMEM216Q9P0N5 145 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 OPTCQ9UBM4 332 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 NDOR1Q9UHB4 597 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 IL17BQ9UHF5 180 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 PADI1Q9ULC6 663 aa11.91□□□□□ -0.5
SKA1-203ENST00000417656 MRPS18BQ9Y676 258 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms