RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SGCEO43556 437 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 B3GALT2O43825 422 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 EOMESO95936 686 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 GADD45AP24522 165 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 ACVR2AP27037 513 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 MPIP34949 423 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 FLT3LGP49771 235 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 PCLAFQ15004 111 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 PRAMEF17Q5VTA0 474 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 KIAA1161Q6NSJ0 714 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 RGMBQ6NW40 437 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 SLC2A7Q6PXP3 512 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 GALNTL5Q7Z4T8 443 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 COQ8AQ8NI60 647 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 C1orf216Q8TAB5 229 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 FAM110BQ8TC76 370 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 PYURFQ96I23 114 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 SIRPGQ9P1W8 387 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 WRAP73Q9P2S5 460 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 GALPQ9UBC7 116 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 DCLK1O15075 740 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 TACSTD2P09758 323 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 CSNK2A2P19784 350 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 ECHS1P30084 290 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 SMSP52788 366 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 SLBPQ14493 270 aaKnown RBP eCLIP9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 TCEAL1Q15170 157 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 SIRPB2Q5JXA9 342 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 PLPP4Q5VZY2 271 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 OR4F3Q6IEY1 312 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 ADGRD2Q7Z7M1 963 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 NPAS4Q8IUM7 802 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 ARL14EPQ8N8R7 260 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 GLIS1Q8NBF1 620 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 KXD1Q9BQD3 176 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 RPF2Q9H7B2 306 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 BIN3Q9NQY0 253 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 TAS2R3Q9NYW6 316 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 ERVK-11Q9UQG0 969 aa9.99□□□□□ -0.81
LIMCH1-203ENST00000396595 SHPRHQ149N8 1683 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 AGR2O95994 175 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 RENP00797 406 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 HLA-DPB1P04440 258 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 S100PP25815 95 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 CENPSQ8N2Z9 138 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 OR2L5Q8NG80 312 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 ZCCHC10Q8TBK6 192 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 TSPEARQ8WU66 669 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 NCSTNQ92542 709 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 ZNF649Q9BS31 505 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 DPAGT1Q9H3H5 408 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 ELAC1Q9H777 363 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 FAM120CQ9NX05 1096 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 FAM53CQ9NYF3 392 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 TRBC2A0A5B9 178 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 LRRC72A6NJI9 287 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 SCAMP1O15126 338 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 CREG1O75629 220 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 RP2O75695 350 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 DLDP09622 509 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 NCBP2P52298 156 aaKnown RBP eCLIP9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 TSTQ16762 297 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 NUP54Q7Z3B4 507 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 TOMM5Q8N4H5 51 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 SLC37A3Q8NCC5 494 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 OR6K6Q8NGW6 343 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 METTL21AQ8WXB1 218 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 RETREG1Q9H6L5 497 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 PRMT8Q9NR22 394 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 CTPS2Q9NRF8 586 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 TNFRSF10DQ9UBN6 386 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 ZNF69Q9UC07 566 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 HEBP2Q9Y5Z4 205 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 TVP23AA6NH52 213 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 HTRA2O43464 458 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 TLX3O43711 291 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 PCDHGA12O60330 932 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 UBXN7O94888 489 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 SRCP12931 536 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 TLR1Q15399 786 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 SDR16C5Q8N3Y7 309 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 ZSCAN1Q8NBB4 408 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 OR14C36Q8NHC7 312 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 SCAMP5Q8TAC9 235 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 RHBDF1Q96CC6 855 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 SIGLEC10Q96LC7 697 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 BCO2Q9BYV7 579 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 UCK2Q9BZX2 261 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 DERL2Q9GZP9 239 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 PLEKHA6Q9Y2H5 1048 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 MYOM1P52179 1685 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 A0A1W2PPW3 197 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 TYROBPO43914 113 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 ARL6IP5O75915 188 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 CBSLP0DN79 551 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 CBSP35520 551 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 CDK6Q00534 326 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 ADAM15Q13444 863 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 TIGD5Q53EQ6 642 aa9.98□□□□□ -0.81
LIMCH1-203ENST00000396595 GRHL2Q6ISB3 625 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms