RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 KIR3DL1P43629 444 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 GTDC1Q4AE62 458 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 TBPL2Q6SJ96 375 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 SPESP1Q6UW49 350 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 ENPP6Q6UWR7 440 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CYP2U1Q7Z449 544 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 ZBTB46Q86UZ6 589 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 ANKRD46Q86W74 232 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 LURAP1LQ8IV03 231 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 PHACTR4Q8IZ21 702 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CENPSQ8N2Z9 138 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 IRF7Q92985 503 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 FOPNLQ96NB1 174 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CTRCQ99895 268 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 RBM4BQ9BQ04 359 aaKnown RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 RBM4Q9BWF3 364 aaKnown RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 GHITMQ9H3K2 345 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 WASH6PQ9NQA3 447 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 DLGAP4Q9Y2H0 992 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 PCDHB14Q9Y5E9 798 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 SLC9A3R1O14745 358 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CATP04040 527 aaKnown RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 RETP07949 1114 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CFL1P23528 166 aaKnown RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CCR2P41597 374 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 RAD23AP54725 363 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 HTRA4P83105 476 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 ABHD18Q0P651 414 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 DDX39BQ13838 428 aaKnown RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CYP2A13Q16696 494 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 POM121L1PQ3SYA9 428 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 C4orf46Q504U0 113 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 THAP5Q7Z6K1 395 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 BEND7Q8N7W2 519 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 L3MBTL4Q8NA19 623 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 SPPL3Q8TCT6 385 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CAPSLQ8WWF8 208 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 SMG7Q92540 1137 aaKnown RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CLP1Q92989 425 aaKnown RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 AURKBQ96GD4 344 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 CXorf21Q9HAI6 301 aa9.35□□□□□ -0.91
COL6A3-204ENST00000392003 IFT80Q9P2H3 777 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-204ENST00000392003 SERPINA1P01009 418 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 PRPS1L1P21108 318 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 ARHGDIAP52565 204 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 ABRQ12979 859 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 SPIDRQ14159 915 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 PON2Q15165 354 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 DPY19L1Q2PZI1 675 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 XKR6Q5GH73 641 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 TMC5Q6UXY8 1006 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 OR5K1Q8NHB7 308 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 SCAMP4Q969E2 229 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 DACT3Q96B18 629 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-204ENST00000392003 CCDC138Q96M89 665 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 MUS81Q96NY9 551 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 CPPED1Q9BRF8 314 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-204ENST00000392003 PAIP1Q9H074 479 aaKnown RBP9.34□□□□□ -0.91
COL6A3-204ENST00000392003 ABCG4Q9H172 646 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 MAGIXQ9H6Y5 334 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 KAT8Q9H7Z6 458 aaKnown RBP9.34□□□□□ -0.91
COL6A3-204ENST00000392003 NTN4Q9HB63 628 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 SPHK2Q9NRA0 654 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 SLC25A37Q9NYZ2 338 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 C3orf18Q9UK00 162 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 OR2AG2A6NM03 316 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 WNT9AO14904 365 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 HS6ST1O60243 411 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 JUPP14923 745 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 SDC1P18827 310 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 IRS1P35568 1242 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 SLC6A12P48065 614 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 HLCSP50747 726 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 ACSM2AQ08AH3 577 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 KCNC3Q14003 757 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 NEDD8Q15843 81 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 BROXQ5VW32 411 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 LIPJQ5W064 366 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 ACSM2BQ68CK6 577 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 NOXRED1Q6NXP6 359 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 SERPINA13PQ6UXR4 307 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 MSANTD1Q6ZTZ1 278 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 Q6ZVL8 140 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 KCTD8Q6ZWB6 473 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 GPR149Q86SP6 731 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 VRK3Q8IV63 474 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 SPARTQ8N0X7 666 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 OR52E4Q8NGH9 312 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 SLC22A8Q8TCC7 542 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 HPS1Q92902 700 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 TESCQ96BS2 214 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 FBXL8Q96CD0 374 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 P2RY13Q9BPV8 354 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 ZSCAN5AQ9BUG6 496 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 FANCFQ9NPI8 374 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 ERVW-1Q9UQF0 538 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 MAN2B2Q9Y2E5 1009 aa9.34□□□□□ -0.91
COL6A3-204ENST00000392003 PRR23AA6NEV1 266 aa9.33□□□□□ -0.92
COL6A3-204ENST00000392003 UPK3BL1B0FP48 263 aa9.33□□□□□ -0.92
COL6A3-204ENST00000392003 UPK3BL2E5RIL1 263 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms