RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 TEAD2Q15562 447 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 SERPINA13PQ6UXR4 307 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 SPRED2Q7Z698 418 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 HSH2DQ96JZ2 352 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 KLHL25Q9H0H3 589 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 ASAH2Q9NR71 780 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 ABCB10Q9NRK6 738 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 MAN2B2Q9Y2E5 1009 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 OR2AG2A6NM03 316 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 LHCGRP22888 699 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 LIPAP38571 399 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 SNRPD1P62314 119 aaKnown RBP15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 FOXD4Q12950 439 aaPredicted RBP15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 LRRC26Q2I0M4 334 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 GPR153Q6NV75 609 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 ZNF621Q6ZSS3 439 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 HORMAD1Q86X24 394 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 REM2Q8IYK8 340 aaPredicted RBP15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 SETD9Q8NE22 299 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 APH1BQ8WW43 257 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 DNASE1L2Q92874 299 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 FOXJ1Q92949 421 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 TCF25Q9BQ70 676 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 SUV39H2Q9H5I1 410 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 RNF167Q9H6Y7 350 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 FBXO8Q9NRD0 319 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 KRT84Q9NSB2 600 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 SCN3BQ9NY72 215 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 NDRG4Q9ULP0 352 aaKnown RBP15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 WNT6Q9Y6F9 365 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 C5orf42Q9H799 3197 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 GOLGA4Q13439 2230 aaKnown RBP15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 ZNF821O75541 412 aaPredicted RBP15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 WDR47O94967 919 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 CCNDBP1O95273 360 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 KRT6AP02538 564 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 KRT6BP04259 564 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 KRT6CP48668 564 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 SEPHS1P49903 392 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 ERVFC1P60507 584 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 DDX39BQ13838 428 aaKnown RBP15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 NEK5Q6P3R8 708 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 VRK3Q8IV63 474 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 NXPE1Q8N323 547 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 PROX1Q92786 737 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 MAL2Q969L2 176 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 PANX1Q96RD7 426 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 DSN1Q9H410 356 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 B4GALT6Q9UBX8 382 aa15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 SAMD4AQ9UPU9 718 aaKnown RBP15.74■□□□□ 0.11
NKX3-1-201ENST00000380871 MYO9BQ13459 2157 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 CLIC1O00299 241 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 KCNK5O95279 499 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 CPSF4O95639 269 aaKnown RBP15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 FABP3P05413 133 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 RPS3P23396 243 aaKnown RBP eCLIP15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 PPP3CCP48454 512 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 PTOV1Q86YD1 416 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 ZZZ3Q8IYH5 903 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 S100ZQ8WXG8 99 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 COPS8Q99627 209 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 RMND5AQ9H871 391 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 BRD9Q9H8M2 597 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 ASIC5Q9NY37 505 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 ZNF229Q9UJW7 825 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 WDR37Q9Y2I8 494 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 HTR3EA5X5Y0 456 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 DNAJB5O75953 348 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 TNFRSF1BP20333 461 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 CD40LGP29965 261 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 PBLDP30039 288 aaPredicted RBP15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 CCR7P32248 378 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 HOXD12P35452 270 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 RPP38P78345 283 aaKnown RBP15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 KEAP1Q14145 624 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 COLEC12Q5KU26 742 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 C22orf39Q6P5X5 142 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 UTS2BQ765I0 119 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 PLD3Q8IV08 490 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 UBTD2Q8WUN7 234 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 TRIM43Q96BQ3 446 aaPredicted RBP15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 KCNC2Q96PR1 638 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 TM9SF3Q9HD45 589 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 TMEM184CQ9NVA4 438 aa15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 THUMPD1Q9NXG2 353 aaKnown RBP15.73■□□□□ 0.11
NKX3-1-201ENST00000380871 EFCAB9A8MZ26 197 aa15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 M0R129 80 aa15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 FPGTO14772 594 aa15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 RECQLP46063 649 aaPredicted RBP15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 MNX1P50219 401 aaPredicted RBP15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 TMEM53Q6P2H8 277 aa15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 ENTHD1Q8IYW4 607 aa15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 ZNF689Q96CS4 500 aaPredicted RBP15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 ZHX1-C8orf76Q96EF9 292 aa15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 GABARAPL1Q9H0R8 117 aa15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 SLC22A14Q9Y267 594 aa15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 FAM32AQ9Y421 112 aaKnown RBP15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 ABHD14A-ACY1A0A1B0GW23 586 aa15.72■□□□□ 0.11
NKX3-1-201ENST00000380871 ANXA5P08758 320 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms