RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 THAP5Q7Z6K1 395 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 SERPINA11Q86U17 422 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 GPR156Q8NFN8 814 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 OR7G3Q8NG95 312 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 COQ10AQ96MF6 247 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 OSBPL6Q9BZF3 934 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 CHST8Q9H2A9 424 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 NFKBIL1Q9UBC1 381 aaPredicted RBP12.92□□□□□ -0.34
CCDC3-202ENST00000378839 DOLKQ9UPQ8 538 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 INSL6Q9Y581 213 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 A0A1W2PPW3 197 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 hCG_2039718K7EN88 272 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 KPNA5O15131 536 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 COX7A2P14406 83 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ACPPP15309 386 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 GPX2P18283 190 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 CSTF3Q12996 717 aaKnown RBP12.91□□□□□ -0.34
CCDC3-202ENST00000378839 GAB4Q2WGN9 574 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 IQCCQ4KMZ1 466 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 SYTL3Q4VX76 610 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ARHGAP15Q53QZ3 475 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ZNF773Q6PK81 442 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 SLCO4C1Q6ZQN7 724 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ZNF547Q8IVP9 402 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 OR5K1Q8NHB7 308 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ZNF480Q8WV37 535 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 NELL1Q92832 810 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 MAL2Q969L2 176 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ARRDC3Q96B67 414 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 TMEM159Q96B96 161 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 CSF3RQ99062 836 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 KIAA0100Q14667 2235 aaKnown RBP12.91□□□□□ -0.34
CCDC3-202ENST00000378839 UGDHO60701 494 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 GCM2O75603 506 aaPredicted RBP12.91□□□□□ -0.34
CCDC3-202ENST00000378839 MYOGP15173 224 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 FSHRP23945 695 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 MAP4P27816 1152 aaKnown RBP12.91□□□□□ -0.34
CCDC3-202ENST00000378839 EPHA2P29317 976 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 GJA8P48165 433 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 DAPP51397 102 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 HPCAP84074 193 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 VMACQ2NL98 169 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 IER5LQ5T953 404 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ZNF852Q6ZMS4 543 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ZDHHC21Q8IVQ6 265 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 KLHDC8AQ8IYD2 350 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 OR8J2Q8NGG1 315 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 OR13F1Q8NGS4 319 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 DNAJB8Q8NHS0 232 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 CSGALNACT1Q8TDX6 532 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 CHTF18Q8WVB6 975 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 SNX19Q92543 992 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 GLMNQ92990 594 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 CCDC138Q96M89 665 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 YIPF2Q9BWQ6 316 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 LHPPQ9H008 270 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 TBC1D14Q9P2M4 693 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 DKK3Q9UBP4 350 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 C1orf226A1L170 272 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 TRIM64BA6NI03 449 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 KPNA3O00505 521 aaPredicted RBP12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ATG13O75143 517 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 C1orf105O95561 183 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 IL1RNP18510 177 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 MAPK1P28482 360 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 DGKGP49619 791 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 CCR3P51677 355 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 RPS13P62277 151 aaKnown RBP12.91□□□□□ -0.34
CCDC3-202ENST00000378839 MEF2AQ02078 507 aaPredicted RBP12.91□□□□□ -0.34
CCDC3-202ENST00000378839 KCNC3Q14003 757 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ZNF284Q2VY69 593 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 C6orf141Q5SZD1 244 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 TSEN54Q7Z6J9 526 aaKnown RBP12.91□□□□□ -0.34
CCDC3-202ENST00000378839 SVOPLQ8N434 492 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 C12orf76Q8N812 135 aaPredicted RBP12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ARMC5Q96C12 935 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 RBM4BQ9BQ04 359 aaKnown RBP12.91□□□□□ -0.34
CCDC3-202ENST00000378839 RBM4Q9BWF3 364 aaKnown RBP12.91□□□□□ -0.34
CCDC3-202ENST00000378839 ADNPQ9H2P0 1102 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 GPATCH2Q9NW75 528 aa12.91□□□□□ -0.34
CCDC3-202ENST00000378839 LOC100130705A0A1B0GUX0 176 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 CARNS1A5YM72 827 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 SAP18O00422 153 aaKnown RBP12.9□□□□□ -0.34
CCDC3-202ENST00000378839 SCAMP2O15127 329 aaKnown RBP12.9□□□□□ -0.34
CCDC3-202ENST00000378839 NPPBP16860 134 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 LDLRAP1Q5SW96 308 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 GTF2IRD2BQ6EKJ0 949 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 GTF2IRD2Q86UP8 949 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 CFAP206Q8IYR0 622 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 C8orf59Q8N0T1 100 aaPredicted RBP12.9□□□□□ -0.34
CCDC3-202ENST00000378839 SPARTQ8N0X7 666 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 CNIH3Q8TBE1 160 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 SP7Q8TDD2 431 aaPredicted RBP12.9□□□□□ -0.34
CCDC3-202ENST00000378839 DTD2Q96FN9 168 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 YTHDF1Q9BYJ9 559 aaKnown RBP12.9□□□□□ -0.34
CCDC3-202ENST00000378839 OR2AG1Q9H205 316 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 SIRT5Q9NXA8 310 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 PRKAB1Q9Y478 270 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 IDSP22304 550 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 EEF1B2P24534 225 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms