RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 PDCD4Q53EL6 469 aaKnown RBP13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 ZNF554Q86TJ5 538 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 OR4K1Q8NGD4 311 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 SLC12A9Q9BXP2 914 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 ABCG4Q9H172 646 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 AIG1Q9NVV5 245 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 SMPD3Q9NY59 655 aaPredicted RBP13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 AKAP7Q9P0M2 348 aaPredicted RBP13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 CYP8B1Q9UNU6 501 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 RGS5O15539 181 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 PRKD3O94806 890 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 CCNYL3P0C7X3 344 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 C1GALT1C1LP0DN25 315 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 PRR5P85299 388 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 TEAD4Q15561 434 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 LETMD1Q6P1Q0 360 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 NPAS3Q8IXF0 933 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 SVOPQ8N4V2 548 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 RBM18Q96H35 190 aaKnown RBP13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 UBXN10Q96LJ8 280 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 OR2M4Q96R27 311 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 ATOH8Q96SQ7 321 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 SNX7Q9UNH6 387 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 PRSS21Q9Y6M0 314 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 J3QRK9 145 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 IFNW1P05000 195 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 FABP3P05413 133 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 RAP2AP10114 183 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 ITGB7P26010 798 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 CCR7P32248 378 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 ATP4BP51164 291 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 NDUFA9Q16795 377 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 LIPJQ5W064 366 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 BHLHA9Q7RTU4 235 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 NRG4Q8WWG1 115 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 FBXL8Q96CD0 374 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 EPS8L2Q9H6S3 715 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 ACTR3BQ9P1U1 418 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 PCDHB11Q9Y5F2 797 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 LTBP1Q14766 1721 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 SIPA1L1O43166 1804 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 A6NHS1 94 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 BCAS2O75934 225 aaPredicted RBP13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 THRBP10828 461 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 TYRP1P17643 537 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 CTSCP53634 463 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 NCF4Q15080 339 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 AMZ1Q400G9 498 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 NANOGP8Q6NSW7 305 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 KRTCAP2Q8N6L1 136 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 ZNF689Q96CS4 500 aaPredicted RBP13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 SHDQ96IW2 340 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 GSDMCQ9BYG8 508 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 NANOGQ9H9S0 305 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 CLK4Q9HAZ1 481 aaKnown RBP13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 IL21Q9HBE4 155 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 ADAP2Q9NPF8 381 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 TESMINQ9Y4I5 508 aa13.74□□□□□ -0.21
SHROOM1-203ENST00000378679 PAICSP22234 425 aaKnown RBP13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 MAGEA10P43363 369 aaPredicted RBP13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 CEACAM7Q14002 265 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 PRSS58Q8IYP2 241 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 OR10Q1Q8NGQ4 319 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 RHBDF1Q96CC6 855 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 KLHDC7BQ96G42 594 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 TPT1P8Q9HAU6 139 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 TNS1Q9HBL0 1735 aaKnown RBP13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 RASSF1Q9NS23 344 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 CDV3Q9UKY7 258 aaKnown RBP13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 FZD4Q9ULV1 537 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 PDLIM1O00151 329 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 CLDN4O14493 209 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 TOR1BO14657 336 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 LSM1O15116 133 aaKnown RBP13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 LILRB3O75022 631 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 APOA1P02647 267 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 IGFBP5P24593 272 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 ARNTP27540 789 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 FOXM1Q08050 763 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 ZNF540Q8NDQ6 660 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 TSPEARQ8WU66 669 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 WDR92Q96MX6 357 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 BTBD9Q96Q07 612 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 SLC35A5Q9BS91 424 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 LYVE1Q9Y5Y7 322 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 GREB1LQ9C091 1923 aaPredicted RBP13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 TNFRSF11BO00300 401 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 EIF3FO00303 357 aaPredicted RBP13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 JUNP05412 331 aaKnown RBP13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 C1orf61Q13536 156 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 ZNF542PQ5EBM4 170 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 DEPDC1Q5TB30 811 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 CLEC14AQ86T13 490 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 TRPV3Q8NET8 790 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 MRPS26Q9BYN8 205 aaKnown RBP13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 OAZ3Q9UMX2 235 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 DMTF1Q9Y222 760 aa13.73□□□□□ -0.21
SHROOM1-203ENST00000378679 EI24O14681 340 aa13.72□□□□□ -0.21
SHROOM1-203ENST00000378679 MMP2P08253 660 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms