RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 CATSPERZQ9NTU4 200 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 CACNA1CQ13936 2221 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 ABCA2Q9BZC7 2435 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 ZNF839A8K0R7 811 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 H0YIG0 161 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 ERGP11308 486 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 CD96P40200 585 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 AGTR2P50052 363 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 ART1P52961 327 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 PTK6Q13882 451 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 FASTKQ14296 549 aaKnown RBP13.08□□□□□ -0.32
VPS29-201ENST00000360579 SEMA3AQ14563 771 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 ARHGAP19Q14CB8 494 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 SPA17Q15506 151 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 SYT16Q17RD7 645 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 MINDY4Q4G0A6 757 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 ANKRD20A4Q4UJ75 823 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 MFSD4BQ5TF39 518 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 PPP1R21Q6ZMI0 780 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 DOLPP1Q86YN1 238 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 SIAH3Q8IW03 269 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 MPP5Q8N3R9 675 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 ARHGEF39Q8N4T4 335 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 SLC5A8Q8N695 610 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 OR9A1PQ8NGU1 263 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 M1APQ8TC57 530 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 MCOLN3Q8TDD5 553 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 DMRTA2Q96SC8 542 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 TRIM51Q9BSJ1 452 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 PPT2Q9UMR5 302 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 PCDHA13Q9Y5I0 950 aa13.08□□□□□ -0.32
VPS29-201ENST00000360579 SOWAHDA6NJG2 315 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 AKR1B15C9JRZ8 316 aaPredicted RBP13.07□□□□□ -0.32
VPS29-201ENST00000360579 NADKO95544 446 aaPredicted RBP13.07□□□□□ -0.32
VPS29-201ENST00000360579 ZNF24P17028 368 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 RPS3P23396 243 aaKnown RBP eCLIP13.07□□□□□ -0.324e-6■■■■□ 22.8
VPS29-201ENST00000360579 ATP5DP30049 168 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 HSD17B2P37059 387 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 GDF10P55107 478 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 TAS2R50P59544 299 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 YBX1P67809 324 aaKnown RBP13.07□□□□□ -0.32
VPS29-201ENST00000360579 MAT1AQ00266 395 aaKnown RBP13.07□□□□□ -0.32
VPS29-201ENST00000360579 OC90Q02509 493 aaPredicted RBP13.07□□□□□ -0.32
VPS29-201ENST00000360579 PRDX1Q06830 199 aaKnown RBP13.07□□□□□ -0.32
VPS29-201ENST00000360579 ICE2Q659A1 982 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 FCRLBQ6BAA4 426 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 SPINK14Q6IE38 97 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 ZNF425Q6IV72 752 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 SLC25A25Q6KCM7 469 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 GALNTL5Q7Z4T8 443 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 CRLF3Q8IUI8 442 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 LGI4Q8N135 537 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 PPHLN1Q8NEY8 458 aaKnown RBP13.07□□□□□ -0.32
VPS29-201ENST00000360579 EBNA1BP2Q99848 306 aaKnown RBP13.07□□□□□ -0.32
VPS29-201ENST00000360579 TMEM121Q9BTD3 319 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 P2RY12Q9H244 342 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 MMP25Q9NPA2 562 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 FAM114A2Q9NRY5 505 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 ANKRD10Q9NXR5 420 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 RUVBL2Q9Y230 463 aaKnown RBP13.07□□□□□ -0.32
VPS29-201ENST00000360579 TCAF1Q9Y4C2 921 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 SPG11Q96JI7 2443 aa13.07□□□□□ -0.32
VPS29-201ENST00000360579 DNHD1Q96M86 4753 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 NAV3Q8IVL0 2385 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 IGHV3-20A0A0C4DH32 117 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 IGKV1-8A0A0C4DH67 115 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 A0A0U1RQJ8 604 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 FAM221AA4D161 298 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 KRT87PA6NCN2 255 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 E7EVH7 732 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 CD3EAPO15446 510 aaKnown RBP13.06□□□□□ -0.32
VPS29-201ENST00000360579 NDUFS3O75489 264 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 MATN4O95460 622 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 NSA2O95478 260 aaKnown RBP13.06□□□□□ -0.32
VPS29-201ENST00000360579 SP1P08047 785 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 CD99P14209 185 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 FDFT1P37268 417 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 EFNA3P52797 238 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 ABATP80404 500 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 SUSD1Q6UWL2 747 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 LANCL3Q6ZV70 420 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 NCCRP1Q6ZVX7 275 aaPredicted RBP13.06□□□□□ -0.32
VPS29-201ENST00000360579 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.06□□□□□ -0.32
VPS29-201ENST00000360579 LDB1Q86U70 411 aaPredicted RBP13.06□□□□□ -0.32
VPS29-201ENST00000360579 CCDC170Q8IYT3 715 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 TAB3Q8N5C8 712 aaPredicted RBP13.06□□□□□ -0.32
VPS29-201ENST00000360579 ASB5Q8WWX0 329 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 RNF166Q96A37 237 aaPredicted RBP13.06□□□□□ -0.32
VPS29-201ENST00000360579 ZNF778Q96MU6 729 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 OLFM1Q99784 485 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 HES7Q9BYE0 225 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 SLC24A3Q9HC58 644 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 LRFN1Q9P244 771 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 TNFRSF10DQ9UBN6 386 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 TAC3Q9UHF0 121 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 PCYOX1Q9UHG3 505 aa13.06□□□□□ -0.32
VPS29-201ENST00000360579 ANKHD1Q8IWZ3 2542 aaKnown RBP13.05□□□□□ -0.32
VPS29-201ENST00000360579 ZNF469Q96JG9 3925 aaPredicted RBP13.05□□□□□ -0.32
VPS29-201ENST00000360579 GABRR3A8MPY1 467 aa13.05□□□□□ -0.32
VPS29-201ENST00000360579 H3BMM5 538 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms