RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 HTR3EA5X5Y0 456 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 PPEF2O14830 753 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 HK1P19367 917 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 GSTM3P21266 225 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 LCN1P31025 176 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 MTMR14Q8NCE2 650 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 OR8D1Q8WZ84 308 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 RPL10LQ96L21 214 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 TREM1Q9NP99 234 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 C12orf71A8MTZ7 269 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 WRBO00258 174 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 MYF6P23409 242 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 GNALP38405 381 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 NCS1P62166 190 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 SLC3A1Q07837 685 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 CYBRD1Q53TN4 286 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 CMTR2Q8IYT2 770 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 NFKBIDQ8NI38 313 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 NEK7Q8TDX7 302 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 UPF1Q92900 1129 aaKnown RBP eCLIP18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 AHCYL2Q96HN2 611 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 ALG5Q9Y673 324 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 C2orf92A0A1B0GVN3 265 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 TBX18O95935 607 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 ACADLP28330 430 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 CDH11P55287 796 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 MC1RQ01726 317 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 CLCA4Q14CN2 919 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 TOMM20Q15388 145 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 GARNL3Q5VVW2 1013 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 PAMR1Q6UXH9 720 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 FAM46DQ8NEK8 389 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 KXD1Q9BQD3 176 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 SLC29A3Q9BZD2 475 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 ZNF639Q9UID6 485 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 MYH8P13535 1937 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 A0A1W2PRQ8 180 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 SOWAHBA6NEL2 793 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 PI15O43692 258 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 GSTT2P0CG29 244 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 RBM34P42696 430 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 KHKP50053 298 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 STC1P52823 247 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 RPP38P78345 283 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 MAP2K5Q13163 448 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 CGB2Q6NT52 195 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 QSOX2Q6ZRP7 698 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 SACM1LQ9NTJ5 587 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 FKBP14Q9NWM8 211 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 FAM118AQ9NWS6 357 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 PCDH10Q9P2E7 1040 aa18.99■□□□□ 0.63
CCDC88B-202ENST00000356786 MANSC4A6NHS7 340 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 LDOC1O95751 146 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 HPRP00739 348 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 BCHEP06276 602 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 EIF5AP63241 154 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 PTGR1Q14914 329 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 GPR33Q49SQ1 333 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 MINDY1Q8N5J2 469 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 CCDC107Q8WV48 283 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 EFHD2Q96C19 240 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 C5orf34Q96MH7 638 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 MINDY3Q9H8M7 445 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 ERVK13-1Q9NX77 482 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 PTPRJQ12913 1337 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 LRP6O75581 1613 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 A0A0G2JN53 185 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 PRSS51A0A1B0GVH4 220 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 GIMD1P0DJR0 217 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 S100GP29377 79 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 MAP2K3P46734 347 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 CLK3P49761 638 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 AGTR2P50052 363 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 ZNF155Q12901 538 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 PRPF38BQ5VTL8 546 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 FBXL22Q6P050 247 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 ZNF782Q6ZMW2 699 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 GPALPP1Q8IXQ4 340 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 MGLLQ99685 303 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 YIPF4Q9BSR8 244 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 ARL5CA6NH57 179 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 APOC1P02654 83 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 ALPPP05187 535 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 SLC35E2BP0CK96 405 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 PPP3R1P63098 170 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 NSUN5Q96P11 429 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 SLC29A1Q99808 456 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 IFT46Q9NQC8 304 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 MRPS23Q9Y3D9 190 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 POP4O95707 220 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 CSN2P05814 226 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 GSTM2P28161 218 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 PDHA2P29803 388 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 PIK3CBP42338 1070 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 MAGEA12P43365 314 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 OR4D2P58180 307 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 FAM46CQ5VWP2 391 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 LRRC66Q68CR7 880 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 NCEH1Q6PIU2 408 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 ANKRD60Q9BZ19 345 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms