RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 PUS3Q9BZE2 481 aaKnown RBP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 RAB33BQ9H082 229 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 TMEM117Q9H0C3 514 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 LRMDAQ9H2I8 198 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 RIMS4Q9H426 269 aaPredicted RBP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 RNF146Q9NTX7 359 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 SMPD3Q9NY59 655 aaPredicted RBP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 LRWD1Q9UFC0 647 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 TLK1Q9UKI8 766 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 RUVBL2Q9Y230 463 aaKnown RBP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 TESMINQ9Y4I5 508 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 PAPPAQ13219 1627 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 A0A087X0K7 114 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 CASTOR2A6NHX0 329 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 OVOL3O00110 214 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 CACNB4O00305 520 aaPredicted RBP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 MDM4O15151 490 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 TLX3O43711 291 aaPredicted RBP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 SCGB2A1O75556 95 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 MMP3P08254 477 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 F7P08709 466 aaPredicted RBP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 HLA-DOBP13765 273 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 PPP2R1AP30153 589 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 MDH1P40925 334 aaKnown RBP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 PDLIM4P50479 330 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 ASCL1P50553 236 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 BEX3Q00994 111 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 CUL3Q13618 768 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 SLC25A53Q5H9E4 307 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 RAET1GQ6H3X3 334 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 ABRAXAS1Q6UWZ7 409 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 DLK2Q6UY11 383 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 BNIPLQ7Z465 357 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 PALB2Q86YC2 1186 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 KLHDC8AQ8IYD2 350 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 GMCL1P1Q8NEA9 526 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 TRIM58Q8NG06 486 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 RBM41Q96IZ5 413 aaKnown RBP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 LRR1Q96L50 414 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 CXorf58Q96LI9 332 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 COQ10AQ96MF6 247 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 MTMR12Q9C0I1 747 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 FAM153AQ9UHL3 310 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 ING1Q9UK53 422 aaPredicted RBP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 DUSP12Q9UNI6 340 aa1.54□□□□□ -2.16
BRCA1-202ENST00000354071 KLF2Q9Y5W3 355 aaPredicted RBP1.54□□□□□ -2.16
BRCA1-202ENST00000354071 EPPK1P58107 5090 aaKnown RBP1.53□□□□□ -2.16
BRCA1-202ENST00000354071 A0A0U1RQV5 110 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 MAGEB16A2A368 324 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 DENND3A2RUS2 1198 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 ASPDHA6ND91 283 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 SDR42E2A6NKP2 422 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 HS3ST1O14792 307 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 MAGEB2O15479 319 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 PSMD3O43242 534 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 RGS14O43566 566 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 WDR1O75083 606 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 MTX2O75431 263 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 CH25HO95992 272 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 LCKP06239 509 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 PROS1P07225 676 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 KRT5P13647 590 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 MNDAP41218 407 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 NPBWR1P48145 328 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 DUOXA1Q1HG43 343 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 UGT3A2Q3SY77 523 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 CCDC40Q4G0X9 1142 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 Q5PR19 223 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 KCTD18Q6PI47 426 aaPredicted RBP1.53□□□□□ -2.16
BRCA1-202ENST00000354071 MIER3Q7Z3K6 550 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 YTHDF3Q7Z739 585 aaKnown RBP1.53□□□□□ -2.16
BRCA1-202ENST00000354071 RPAINQ86UA6 219 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 PTOV1Q86YD1 416 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 KDM8Q8N371 416 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 GCSAMQ8N6F7 178 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 ADAD2Q8NCV1 583 aaKnown RBP1.53□□□□□ -2.16
BRCA1-202ENST00000354071 OR8J1Q8NGP2 316 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 NTN5Q8WTR8 489 aaPredicted RBP1.53□□□□□ -2.16
BRCA1-202ENST00000354071 ASB5Q8WWX0 329 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 ABTB1Q969K4 478 aaPredicted RBP1.53□□□□□ -2.16
BRCA1-202ENST00000354071 MCHR2Q969V1 340 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 SCMH1Q96GD3 660 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 IGSF21Q96ID5 467 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 MAGED4Q96JG8 741 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 SHARPINQ9H0F6 387 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 ARRDC1-AS1Q9H2J1 176 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 GORASP2Q9H8Y8 452 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 GPN1Q9HCN4 374 aaPredicted RBP1.53□□□□□ -2.16
BRCA1-202ENST00000354071 COPS7AQ9UBW8 275 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 UBQLN2Q9UHD9 624 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 PCDHA7Q9UN72 937 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 PLEKHA6Q9Y2H5 1048 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 HS3ST3A1Q9Y663 406 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 MID1O15344 667 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 KIF1CO43896 1103 aaKnown RBP1.53□□□□□ -2.16
BRCA1-202ENST00000354071 TSPAN1O60635 241 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 EPN2O95208 641 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 CKMT2P17540 419 aa1.53□□□□□ -2.16
BRCA1-202ENST00000354071 S1PR1P21453 382 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms