RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 DCTP40126 519 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 PTGER3P43115 390 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 TAS2R38P59533 333 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 POLR2LP62875 67 aaKnown RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 RPL38P63173 70 aaKnown RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 IFITM3Q01628 133 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 EMX1Q04741 257 aaPredicted RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 CYP4F3Q08477 520 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 ELAVL3Q14576 367 aaKnown RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 PON2Q15165 354 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 DPPA4Q7L190 304 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 ANKRD13BQ86YJ7 626 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 PHACTR4Q8IZ21 702 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 PARP8Q8N3A8 854 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 ZNF513Q8N8E2 541 aaPredicted RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 KCNJ9Q92806 393 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 RIOK2Q9BVS4 552 aaKnown RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 MROQ9BYG7 248 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 CCDC90BQ9GZT6 254 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 MKRN2Q9H000 416 aaKnown RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 CD93Q9NPY3 652 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 DAPK2Q9UIK4 370 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 NAALAD2Q9Y3Q0 740 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 ELOVL7A1L3X0 281 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 IFRD1O00458 451 aaPredicted RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 PRMT5O14744 637 aaPredicted RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 MMP20O60882 483 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 NDUFS2O75306 463 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 SLC2A4P14672 509 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 COL9A1P20849 921 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 HPCAL1P37235 193 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 EIF2DP41214 584 aaKnown RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 P2RY2P41231 377 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 PIK3CGP48736 1102 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 CNTN1Q12860 1018 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 GTF2H2Q13888 395 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 PCBP2Q15366 365 aaKnown RBP eCLIP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 MAPKAPK3Q16644 382 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 GTDC1Q4AE62 458 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 TMEM196Q5HYL7 178 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 SPANXN4Q5MJ08 99 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 PERM1Q5SV97 790 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 HENMT1Q5T8I9 393 aaKnown RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 ZNF691Q5VV52 312 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 GTF2H2CQ6P1K8 395 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 SBSNQ6UWP8 590 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 DET1Q7L5Y6 550 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 CHPFQ8IZ52 775 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 C10orf111Q8N326 155 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 SVOPLQ8N434 492 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 TMIEQ8NEW7 156 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 CNIH3Q8TBE1 160 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 FAR1Q8WVX9 515 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 FAM162AQ96A26 154 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 P2RY13Q9BPV8 354 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 IPPKQ9H8X2 491 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 AKIP1Q9NQ31 210 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 SLC6A13Q9NSD5 602 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 FARSBQ9NSD9 589 aaKnown RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 TMEFF2Q9UIK5 374 aaPredicted RBP8.33□□□□□ -1.08
TRIM55-204ENST00000353317 C3orf18Q9UK00 162 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 INVSQ9Y283 1065 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 SNX5Q9Y5X3 404 aa8.33□□□□□ -1.08
TRIM55-204ENST00000353317 TMEM247A6NEH6 219 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 CXCR6O00574 342 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 KPNA4O00629 521 aaPredicted RBP8.32□□□□□ -1.08
TRIM55-204ENST00000353317 MID1O15344 667 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 APODP05090 189 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 ADRB3P13945 408 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 CD9P21926 228 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 ITGB7P26010 798 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 HMGCS1Q01581 520 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 OCA2Q04671 838 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 TRAF3Q13114 568 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 ZNF846Q147U1 533 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 GPRC6AQ5T6X5 926 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 PIP5KL1Q5T9C9 394 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 FRA10AC1Q70Z53 315 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 SLCO6A1Q86UG4 719 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 DCP2Q8IU60 420 aaKnown RBP8.32□□□□□ -1.08
TRIM55-204ENST00000353317 KRTCAP2Q8N6L1 136 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 BEND7Q8N7W2 519 aaPredicted RBP8.32□□□□□ -1.08
TRIM55-204ENST00000353317 IL17RCQ8NAC3 791 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 OR10Q1Q8NGQ4 319 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 ZFP90Q8TF47 636 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 OR8D1Q8WZ84 308 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 LRIG1Q96JA1 1093 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 COQ10AQ96MF6 247 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 UBE2ZQ9H832 354 aaPredicted RBP8.32□□□□□ -1.08
TRIM55-204ENST00000353317 HMG20AQ9NP66 347 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 DCAF13Q9NV06 445 aaKnown RBP8.32□□□□□ -1.08
TRIM55-204ENST00000353317 NUDT4Q9NZJ9 180 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 AASSQ9UDR5 926 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 CRLS1Q9UJA2 301 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 VPS9D1Q9Y2B5 631 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 PCYT1BQ9Y5K3 369 aaPredicted RBP8.32□□□□□ -1.08
TRIM55-204ENST00000353317 SPEGQ15772 3267 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 IGLV3-16A0A075B6K0 115 aa8.32□□□□□ -1.08
TRIM55-204ENST00000353317 KRT87PA6NCN2 255 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 181.7 ms