RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ENTPD1P49961 510 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 RAE1P78406 368 aaKnown RBP21.04■□□□□ 0.96
SHMT1-202ENST00000352886 PIGFQ07326 219 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 C16orf72Q14CZ0 275 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 CEP68Q76N32 757 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 PARS2Q7L3T8 475 aaKnown RBP21.04■□□□□ 0.96
SHMT1-202ENST00000352886 GPR155Q7Z3F1 870 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 VTCN1Q7Z7D3 282 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 PGBD3Q8N328 593 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 BPIFB6Q8NFQ5 453 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 OR56A3Q8NH54 315 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 MARK1Q9P0L2 795 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 RPS6KA6Q9UK32 745 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 MYO1GB0I1T2 1018 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 SLC16A6O15403 523 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 DIRAS1O95057 198 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 HSD3B1P14060 373 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 CD247P20963 164 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 HSD3B2P26439 372 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 C21orf58P58505 322 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 GABARAPL2P60520 117 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 HKDC1Q2TB90 917 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 ERAP2Q6P179 960 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 ERICH5Q6P6B1 374 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 CYP4Z1Q86W10 505 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 OR7G3Q8NG95 312 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 HUS1BQ8NHY5 278 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 ING5Q8WYH8 240 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 PAWRQ96IZ0 340 aaKnown RBP21.04■□□□□ 0.96
SHMT1-202ENST00000352886 FOPNLQ96NB1 174 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 TPT1P8Q9HAU6 139 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 LRRK1Q38SD2 2015 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 TRIM64BA6NI03 449 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 BCKDKO14874 412 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 ANXA4P09525 319 aaPredicted RBP21.03■□□□□ 0.96
SHMT1-202ENST00000352886 TMBIM6P55061 237 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 ZC3H12BQ5HYM0 836 aaKnown RBP21.03■□□□□ 0.96
SHMT1-202ENST00000352886 KLHDC8AQ8IYD2 350 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 GPR156Q8NFN8 814 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 STARD8Q92502 1023 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 FAF1Q9UNN5 650 aaPredicted RBP21.03■□□□□ 0.96
SHMT1-202ENST00000352886 PCDHB11Q9Y5F2 797 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 GABRR3A8MPY1 467 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 SLC1A7O00341 560 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 KPNA3O00505 521 aaPredicted RBP21.03■□□□□ 0.96
SHMT1-202ENST00000352886 FABP3P05413 133 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 GALK1P51570 392 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 ARHGDIAP52565 204 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 VLDLRP98155 873 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 TUBA3CQ13748 450 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 NEIL2Q969S2 332 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 TBC1D20Q96BZ9 403 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 OTUB2Q96DC9 234 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 METTL2AQ96IZ6 378 aaKnown RBP21.03■□□□□ 0.96
SHMT1-202ENST00000352886 LRIG1Q96JA1 1093 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 TM9SF3Q9HD45 589 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 FBXO10Q9UK96 956 aa21.03■□□□□ 0.96
SHMT1-202ENST00000352886 FKBP9O95302 570 aa21.02■□□□□ 0.96
SHMT1-202ENST00000352886 IL1RL1Q01638 556 aa21.02■□□□□ 0.96
SHMT1-202ENST00000352886 TOP3AQ13472 1001 aaPredicted RBP21.02■□□□□ 0.96
SHMT1-202ENST00000352886 RAPSNQ13702 412 aa21.02■□□□□ 0.96
SHMT1-202ENST00000352886 CPTPQ5TA50 214 aa21.02■□□□□ 0.96
SHMT1-202ENST00000352886 TMPRSS11BQ86T26 416 aa21.02■□□□□ 0.96
SHMT1-202ENST00000352886 PIK3C3Q8NEB9 887 aa21.02■□□□□ 0.96
SHMT1-202ENST00000352886 GABARAPL1Q9H0R8 117 aa21.02■□□□□ 0.96
SHMT1-202ENST00000352886 GULP1Q9UBP9 304 aa21.02■□□□□ 0.96
SHMT1-202ENST00000352886 COQ6Q9Y2Z9 468 aa21.02■□□□□ 0.96
SHMT1-202ENST00000352886 PTGES3LE9PB15 166 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 H3BM21 787 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 SEMG1P04279 462 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 ITGAMP11215 1152 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 CCNA2P20248 432 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 RYKP34925 604 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 ASMTP46597 345 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 DGKGP49619 791 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 IL5RAQ01344 420 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 PCDH1Q08174 1060 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 IL18R1Q13478 541 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 DHCR24Q15392 516 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 GTF2IRD2BQ6EKJ0 949 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 GTF2IRD2Q86UP8 949 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 CNIH3Q8TBE1 160 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 MAGED4Q96JG8 741 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 HSH2DQ96JZ2 352 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 BAG5Q9UL15 447 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 INSL6Q9Y581 213 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 KCNE2Q9Y6J6 123 aa21.02■□□□□ 0.95
SHMT1-202ENST00000352886 hCG_2014768A0A024R1R8 64 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 A0A0J9YVX5 310 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 CYP4B1P13584 511 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 DAPP51397 102 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 METAP1P53582 386 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 PLA2G16P53816 162 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 RPS13P62277 151 aaKnown RBP21.01■□□□□ 0.95
SHMT1-202ENST00000352886 NFATC3Q12968 1075 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 ZNF697Q5TEC3 545 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 CBLL1Q75N03 491 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 GRASPQ7Z6J2 395 aaPredicted RBP21.01■□□□□ 0.95
SHMT1-202ENST00000352886 TRIM74Q86UV6 250 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 RIBC2Q9H4K1 309 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms