RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PCNPQ8WW12 178 aaKnown RBP8.46□□□□□ -1.06
RTN3-202ENST00000339997 AKAP1Q92667 903 aaKnown RBP eCLIP8.46□□□□□ -1.063e-8■■■■□ 20.2
RTN3-202ENST00000339997 FATE1Q969F0 183 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 FCRL5Q96RD9 977 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 FUNDC2Q9BWH2 189 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 NIFKQ9BYG3 293 aaKnown RBP8.46□□□□□ -1.06
RTN3-202ENST00000339997 GPR88Q9GZN0 384 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 TMEM27Q9HBJ8 222 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 POT1Q9NUX5 634 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 MARK1Q9P0L2 795 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ATRNO75882 1429 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.46□□□□□ -1.06
RTN3-202ENST00000339997 A0A1B0GVC2 190 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 A6NIN4 97 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 PLATP00750 562 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 IVDP26440 423 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 PTGER3P43115 390 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 WNT7BP56706 349 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 C1QTNF8P60827 252 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 SULT2A1Q06520 285 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 HEPACAMQ14CZ8 416 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 CHRNA6Q15825 494 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 DUSP28Q4G0W2 176 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.46□□□□□ -1.06
RTN3-202ENST00000339997 VARS2Q5ST30 1063 aaKnown RBP8.46□□□□□ -1.06
RTN3-202ENST00000339997 C6orf141Q5SZD1 244 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ASRGL1Q7L266 308 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 GPR151Q8TDV0 419 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ZSWIM3Q96MP5 696 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 TTLL2Q9BWV7 592 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ASPNQ9BXN1 380 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 TCF7L1Q9HCS4 588 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 TREM1Q9NP99 234 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 ABCB8Q9NUT2 735 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 PAK1IP1Q9NWT1 392 aaPredicted RBP8.46□□□□□ -1.06
RTN3-202ENST00000339997 CYTH4Q9UIA0 394 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 SIX4Q9UIU6 781 aa8.46□□□□□ -1.06
RTN3-202ENST00000339997 A0A1B0GVT2 93 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 CHST10O43529 356 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 ZNF8P17098 575 aaPredicted RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 SLC6A4P31645 630 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 FAUP35544 74 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 SOX2P48431 317 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 FLT3LGP49771 235 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 EEFSECP57772 596 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 ID2Q02363 134 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 ZNF155Q12901 538 aaPredicted RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 SLBPQ14493 270 aaKnown RBP eCLIP8.45□□□□□ -1.06
RTN3-202ENST00000339997 EIF2S3LQ2VIR3 472 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 PLPP4Q5VZY2 271 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 NIPAL1Q6NVV3 410 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 NXPE1Q8N323 547 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 BOLLQ8N9W6 283 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 OR2L3Q8NG85 312 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 PIGXQ8TBF5 258 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 DENND1AQ8TEH3 1009 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 CASTOR1Q8WTX7 329 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 SLC25A36Q96CQ1 311 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 HAVCR1Q96D42 359 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 COQ8BQ96D53 544 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 C12orf66Q96MD2 445 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 TAS2R7Q9NYW3 318 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 VPS29Q9UBQ0 182 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 FETUBQ9UGM5 382 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 WDR37Q9Y2I8 494 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 A0A0D9SEW6 157 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 OR2AT4A6NND4 320 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 C12orf71A8MTZ7 269 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 APOC3P02656 99 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 PRPS2P11908 318 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 SMPD1P17405 629 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 SSTR4P31391 388 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 YBEYP58557 167 aaPredicted RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 RPS26P62854 115 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 SREBF2Q12772 1141 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 LARS2Q15031 903 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 RBM48Q5RL73 367 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 C6orf136Q5SQH8 315 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 CEACAM20Q6UY09 585 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 JAZF1Q86VZ6 243 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 ATCAYQ86WG3 371 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 PPTC7Q8NI37 304 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 ZC3H10Q96K80 434 aaKnown RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 SNX27Q96L92 541 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 ZNF558Q96NG5 402 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 ERMAPQ96PL5 475 aaPredicted RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 TM9SF2Q99805 663 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 FZD8Q9H461 694 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 USP29Q9HBJ7 922 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 FLRT1Q9NZU1 646 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 H3BNH8 94 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 XKRYO14609 159 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 VILLO15195 856 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 IRAK2O43187 625 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 SOX30O94993 753 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 MAPK8P45983 427 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 PREPP48147 710 aa8.45□□□□□ -1.06
RTN3-202ENST00000339997 NCBP2P52298 156 aaKnown RBP eCLIP8.45□□□□□ -1.06
RTN3-202ENST00000339997 USF2Q15853 346 aaPredicted RBP8.45□□□□□ -1.06
RTN3-202ENST00000339997 GTDC1Q4AE62 458 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms