RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 AKAP10O43572 662 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 DNAJA2O60884 412 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 TGFB1P01137 390 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 S100A3P33764 101 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 RABIFP47224 123 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 PWP1Q13610 501 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 RBBP5Q15291 538 aaKnown RBP12.88□□□□□ -0.35
HMGB1-202ENST00000339872 PGS1Q32NB8 556 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 PUS10Q3MIT2 529 aaKnown RBP12.88□□□□□ -0.35
HMGB1-202ENST00000339872 DNAJC14Q6Y2X3 702 aaPredicted RBP12.88□□□□□ -0.35
HMGB1-202ENST00000339872 ARPINQ7Z6K5 226 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 ABI3BPQ7Z7G0 1075 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 OR2L8Q8NGY9 312 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 NRG4Q8WWG1 115 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 GTF2H4Q92759 462 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 TESCQ96BS2 214 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 C11orf24Q96F05 449 aaPredicted RBP12.88□□□□□ -0.35
HMGB1-202ENST00000339872 METTL2AQ96IZ6 378 aaKnown RBP12.88□□□□□ -0.35
HMGB1-202ENST00000339872 RSRC1Q96IZ7 334 aaKnown RBP12.88□□□□□ -0.35
HMGB1-202ENST00000339872 PELI2Q9HAT8 420 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 NMRK1Q9NWW6 199 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 HEBP2Q9Y5Z4 205 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 SAP18O00422 153 aaKnown RBP12.88□□□□□ -0.35
HMGB1-202ENST00000339872 STAMBPO95630 424 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 HSD17B1P14061 328 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 PCSK2P16519 638 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 CCR8P51685 355 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 RAE1P78406 368 aaKnown RBP12.88□□□□□ -0.35
HMGB1-202ENST00000339872 TRAP1Q12931 704 aaKnown RBP12.88□□□□□ -0.35
HMGB1-202ENST00000339872 ICE2Q659A1 982 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 CYP2R1Q6VVX0 501 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 LPCAT2Q7L5N7 544 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 IFNEQ86WN2 208 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 RIMKLAQ8IXN7 391 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 SIX5Q8N196 739 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 SLC22A18ASQ8N1D0 253 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 DEFB123Q8N688 67 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 CHTF18Q8WVB6 975 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 SHDQ96IW2 340 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 CGREF1Q99674 301 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 AIF1LQ9BQI0 150 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 OR51B5Q9H339 312 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 ALG2Q9H553 416 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 WASH6PQ9NQA3 447 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 COLEC10Q9Y6Z7 277 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 GNG14A0A1W2PPG7 69 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 H3BNX3 289 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 H7BY64 318 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 ZNF217O75362 1048 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 ANXA4P09525 319 aaPredicted RBP12.87□□□□□ -0.35
HMGB1-202ENST00000339872 PRPS1L1P21108 318 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 TIA1P31483 386 aaKnown RBP eCLIP12.87□□□□□ -0.35
HMGB1-202ENST00000339872 PIK3CBP42338 1070 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 PXNP49023 591 aaPredicted RBP12.87□□□□□ -0.35
HMGB1-202ENST00000339872 STARD6P59095 220 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 ABRAXAS1Q6UWZ7 409 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 PRR23BQ6ZRT6 265 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 JPH3Q8WXH2 748 aaPredicted RBP12.87□□□□□ -0.35
HMGB1-202ENST00000339872 PRAP1Q96NZ9 151 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 CAAP1Q9H8G2 361 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 WNT16Q9UBV4 365 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 EGFL7Q9UHF1 273 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 DMTF1Q9Y222 760 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 IGHV1OR15-9A0A0B4J2B8 117 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 TOR1BO14657 336 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 PCDH7O60245 1069 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 KDM1AO60341 852 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 DFNA5O60443 496 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 CXCR2P25025 360 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 VHLP40337 213 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 GSK3BP49841 420 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 MTPNP58546 118 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 CYP4F2P78329 520 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 PHC1P78364 1004 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 LIPEQ05469 1076 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 BNIP2Q12982 314 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 RNF111Q6ZNA4 994 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 VN1R5Q7Z5H4 357 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 ADCK2Q7Z695 626 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 GPR180Q86V85 440 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 ANKRD46Q86W74 232 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 DHFR2Q86XF0 187 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 ADHFE1Q8IWW8 467 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 ABHD11Q8NFV4 315 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 LRGUKQ96M69 825 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 KCTD14Q9BQ13 255 aaPredicted RBP12.87□□□□□ -0.35
HMGB1-202ENST00000339872 PRDM6Q9NQX0 595 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 TRNAU1APQ9NX07 287 aaKnown RBP12.87□□□□□ -0.35
HMGB1-202ENST00000339872 VAPAQ9P0L0 249 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.87□□□□□ -0.35
HMGB1-202ENST00000339872 C15orf41Q9Y2V0 281 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.87□□□□□ -0.35
HMGB1-202ENST00000339872 TSC22D4Q9Y3Q8 395 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 NEUROG3Q9Y4Z2 214 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 PCDHB11Q9Y5F2 797 aa12.87□□□□□ -0.35
HMGB1-202ENST00000339872 HEATR5BQ9P2D3 2071 aa12.86□□□□□ -0.35
HMGB1-202ENST00000339872 TRBV23OR9-2A0A075B6M9 112 aa12.86□□□□□ -0.35
HMGB1-202ENST00000339872 FEZF1A0PJY2 475 aa12.86□□□□□ -0.35
HMGB1-202ENST00000339872 ANKDD1BA6NHY2 528 aa12.86□□□□□ -0.35
HMGB1-202ENST00000339872 PRMT3O60678 531 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms