RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ALG8Q9BVK2 526 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ULBP1Q9BZM6 244 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 OSBPL5Q9H0X9 879 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ALG2Q9H553 416 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 GLTPQ9NZD2 209 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ATXN7L1Q9ULK2 861 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 GAB2Q9UQC2 676 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 GRM8O00222 908 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 FANCGO15287 622 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 TMEM63AO94886 807 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 FTH1P02794 183 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ETV1P50549 477 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 HNRNPFP52597 415 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 RSU1Q15404 277 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 OR4D1Q15615 310 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 SPANXN3Q5MJ09 141 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 GRTP1Q5TC63 336 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 NXPE4Q6UWF7 544 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ADGRG6Q86SQ4 1221 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 TMEM192Q8IY95 271 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 MINDY1Q8N5J2 469 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 LPGAT1Q92604 370 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 NTAN1Q96AB6 310 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 HSPBAP1Q96EW2 488 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 TGM7Q96PF1 710 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 METTL15A6NJ78 407 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 OPN1MWP04001 364 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 CAPNS1P04632 268 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 OPN1MW2P0DN77 364 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 OPN1MW3P0DN78 364 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 MBL2P11226 248 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 TYMPP19971 482 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 RAB5AP20339 215 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 GPX6P59796 221 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 GSTM4Q03013 218 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 TNK1Q13470 666 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 OPCMLQ14982 345 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ADGRF1Q5T601 910 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 USP45Q70EL2 814 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 SPATC1Q76KD6 591 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ZFP62Q8NB50 900 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 PGAP3Q96FM1 320 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 NECTIN4Q96NY8 510 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ADAM2Q99965 735 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 OR8D2Q9GZM6 311 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 KATNBL1Q9H079 304 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 FAIMQ9NVQ4 179 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 CNOT6Q9ULM6 557 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ST14Q9Y5Y6 855 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ADGBQ8N7X0 1667 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 UHRF1BP1LA0JNW5 1464 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 EPHB6O15197 1021 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ACTL6BO94805 426 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 LTA4HP09960 611 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 PRRX1P54821 245 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 SMIM11AP58511 58 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 SLC25A3Q00325 362 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 TBCEQ15813 527 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 TMEM97Q5BJF2 176 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 CES3Q6UWW8 571 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 NAA40Q86UY6 237 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 MAP4K3Q8IVH8 894 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 CARFQ8N187 725 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 BEST3Q8N1M1 668 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 SVOPLQ8N434 492 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 GPR156Q8NFN8 814 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 OR52J3Q8NH60 311 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 AGAP11Q8TF27 550 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 TSPEARQ8WU66 669 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 COLEC11Q9BWP8 271 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 ACTR3BQ9P1U1 418 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 KLHL13Q9P2N7 655 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 LCMT1Q9UIC8 334 aa7.45□□□□□ -1.22
LIMCH1-201ENST00000313860 LOC105369274A0A096LPK9 316 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 LOC102723532A0A0G2JNH3 316 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 OR4C45A6NMZ5 311 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 BCKDKO14874 412 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 OR2B3O76000 313 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 TTLL1O95922 423 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 CDH5P33151 784 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 MRPS34P82930 218 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 TRAM1Q15629 374 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 MRNIPQ6NTE8 343 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 OR4N4Q8N0Y3 316 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 TC2NQ8N9U0 490 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 PDPRQ8NCN5 879 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 RASGRP4Q8TDF6 673 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 TMEM41AQ96HV5 264 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 DHRS4Q9BTZ2 278 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 C1orf43Q9BWL3 253 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 TMEM117Q9H0C3 514 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 MTHFD2LQ9H903 347 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 AIG1Q9NVV5 245 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 MRPL15Q9P015 296 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 GULP1Q9UBP9 304 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 DERAQ9Y315 318 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 HCN4Q9Y3Q4 1203 aa7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 IRS4O14654 1257 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-201ENST00000313860 ONECUT3O60422 494 aaPredicted RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms