RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 JUNP05412 331 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 SAGP10523 405 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 MGAT1P26572 445 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 CASP9P55211 416 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ADAM17P78536 824 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 BLOC1S1P78537 153 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PRR5P85299 388 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 BOP1Q14137 746 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 SF3A2Q15428 464 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 KCNA10Q16322 511 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PTCHD3Q3KNS1 767 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ARL13AQ5H913 290 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 C6orf141Q5SZD1 244 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF613Q6PF04 617 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 BEND4Q6ZU67 534 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 JAZF1Q86VZ6 243 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 WDSUB1Q8N9V3 476 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 NINJ1Q92982 152 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 STRA6Q9BX79 667 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 CIPCQ9C0C6 399 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 LRRN3Q9H3W5 708 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 USP21Q9UK80 565 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 TAF6LQ9Y6J9 622 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 LOC100506127A0A0U1RQW1 187 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 POLR1CO15160 346 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 SEC22BO75396 215 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 UPK1BO75841 260 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 RCBTB2O95199 551 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 MT-ND5P03915 603 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 IFNA4P05014 189 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 RPS3P23396 243 aaKnown RBP eCLIP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 TAF1AQ15573 450 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 DLG2Q15700 870 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 AWAT2Q6E213 333 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 FAM117BQ6P1L5 589 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 MOB2Q70IA6 237 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 RTL10Q7L3V2 364 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PCSK9Q8NBP7 692 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 FAM46DQ8NEK8 389 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 SPPL2BQ8TCT7 592 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 TSEN15Q8WW01 171 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 LRRC58Q96CX6 371 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 LRIG1Q96JA1 1093 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 C1orf74Q96LT6 269 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF578Q96N58 590 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 COPS7AQ9UBW8 275 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 POLHQ9Y253 713 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 NUBP2Q9Y5Y2 271 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ABHD14A-ACY1A0A1B0GW23 586 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 M0R036 132 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 GPR25O00155 361 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 CXCR6O00574 342 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 SLC16A6O15403 523 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 GPRIN2O60269 458 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PKMP14618 531 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 CPN2P22792 545 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 FBLN1P23142 703 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 HOXA13P31271 388 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 MTHFRP42898 656 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 DUSP6Q16828 381 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 C3orf33Q6P1S2 294 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 COMMD1Q8N668 190 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 CAMKVQ8NCB2 501 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PLD4Q96BZ4 506 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 SNRNP25Q9BV90 132 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 FARSAQ9Y285 508 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 MAU2Q9Y6X3 613 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 MYO7BQ6PIF6 2116 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 LRP5O75197 1615 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 TPST1O60507 370 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 AOC2O75106 756 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 IFNA2P01563 188 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 IFNA10P01566 189 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 CYP2B6P20813 491 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 CD6P30203 668 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ERVK-21P61565 698 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 RING1Q06587 406 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 HEPACAMQ14CZ8 416 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 BCL2A1Q16548 175 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 GPAT3Q53EU6 434 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 NBPF12Q5TAG4 269 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PHC2Q8IXK0 858 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ANKRD53Q8N9V6 530 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 OR4L1Q8NH43 312 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 COL26A1Q96A83 441 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF486Q96H40 463 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 NECAB3Q96P71 396 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 EMC7Q9NPA0 242 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 PRMT8Q9NR22 394 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 CNOT6Q9ULM6 557 aaKnown RBP5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF780BQ9Y6R6 833 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 KIAA2026Q5HYC2 2103 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 MSCO60682 206 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 JCHAINP01591 159 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 HRGP04196 525 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ETFAP13804 333 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 MATN1P21941 496 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 LCN1P31025 176 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 GALNT2Q10471 571 aa5.11□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF234Q14588 700 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms