RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SCGB2B2Q4G0G5 96 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 PAPD4Q6PIY7 484 aaKnown RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 SGCDQ92629 289 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 C7orf34Q96L11 122 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 RPRD1AQ96P16 312 aaPredicted RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 CENPOQ9BU64 300 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 C3orf14Q9HBI5 128 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 GPATCH2Q9NW75 528 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 DUS2Q9NX74 493 aaKnown RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 MAT2BQ9NZL9 334 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 PITPNM1O00562 1244 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 PRAMEF1O95521 474 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 ODC1P11926 461 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 CDH15P55291 814 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 PROX2Q3B8N5 592 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 ZNF678Q5SXM1 525 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 NLRP8Q86W28 1048 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 TNS4Q8IZW8 715 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 SLC47A1Q96FL8 570 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 PDLIM5Q96HC4 596 aaKnown RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 FNDC11Q9BVV2 318 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 BEX2Q9BXY8 128 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 DUSP21Q9H596 190 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 BEX1Q9HBH7 125 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 QPCTLQ9NXS2 382 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 SAMHD1Q9Y3Z3 626 aaKnown RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 LRRC37AA6NMS7 1700 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 ABHD14A-ACY1A0A1B0GW23 586 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 M0R233 179 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 AIREO43918 545 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 RFPL2O75678 378 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 TXNP10599 105 aaKnown RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 GGT1P19440 569 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 GPX3P22352 226 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 LCN1P31025 176 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 HSD17B2P37059 387 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 BNIP3Q12983 259 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 PTGR1Q14914 329 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 VWA5B1Q5TIE3 1220 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 AGAP6Q5VW22 663 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 RAP1GAP2Q684P5 730 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 ZNF367Q7RTV3 350 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 TIPARPQ7Z3E1 657 aaKnown RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 GJD3Q8N144 294 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 SLC13A3Q8WWT9 602 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 AGAP4Q96P64 663 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 MGME1Q9BQP7 344 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 MCMBPQ9BTE3 642 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 TREX1Q9NSU2 369 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 RBM22Q9NW64 420 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS35-201ENST00000299138 GSKIPQ9P0R6 139 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 TRAPPC4Q9Y296 219 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 PLEKHM1Q9Y4G2 1056 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 MAGED1Q9Y5V3 778 aaPredicted RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 A0A0U1RQK1 487 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 C7orf72A4D263 438 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 E9PI62 339 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 NPIPA2E9PIF3 369 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 NPIPA5E9PKD4 350 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 NPIPA3F8WFD2 350 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 RASGRP1O95267 797 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 RPS17P08708 135 aaKnown RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 CKMT1AP12532 417 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 CKMT2P17540 419 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 BMP7P18075 431 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 FDXRP22570 491 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 DNAJA1P31689 397 aaKnown RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 ST8SIA6P61647 398 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 CLCQ05315 142 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 IL10RBQ08334 325 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 MAPKAPK3Q16644 382 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 LRRC37A5PQ49AS3 106 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 GPAT3Q53EU6 434 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 EEF1DP3Q658K8 133 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 COMMD7Q86VX2 200 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 MCOLN3Q8TDD5 553 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 RAD9AQ99638 391 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 ZNF334Q9HCZ1 680 aaPredicted RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 ZDHHC2Q9UIJ5 367 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 NPIPA1Q9UND3 350 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 ERVK-19Q9WJR5 959 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 WDR45Q9Y484 360 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 PCDHGB5Q9Y5G0 923 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 KCNE2Q9Y6J6 123 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 TEX51A0A1B0GUA7 166 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 SMIM35A0A1B0GVV1 85 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 PRORSD1PA6NEY8 169 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 CPSF4LA6NMK7 179 aaKnown RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 H0Y8G0 127 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 GSTT2BP0CG30 244 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 WNT3AP56704 352 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 ACVR1Q04771 509 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 HSPA14Q0VDF9 509 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 CYBRD1Q53TN4 286 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 EIF5AL1Q6IS14 154 aaKnown RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 ZNF529Q6P280 563 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 METAP1DQ6UB28 335 aaPredicted RBP6.23□□□□□ -1.41
VPS35-201ENST00000299138 RANBP10Q6VN20 620 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 RETREG3Q86VR2 466 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 LPCAT1Q8NF37 534 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms