RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 LPCAT2Q7L5N7 544 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 TRMT11Q7Z4G4 463 aaKnown RBP23.13■■□□□ 1.29
TRIM54-201ENST00000296098 GPR156Q8NFN8 814 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 OR5K1Q8NHB7 308 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 SH3KBP1Q96B97 665 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 LINC00615Q96LM1 132 aaPredicted RBP23.13■■□□□ 1.29
TRIM54-201ENST00000296098 MUS81Q96NY9 551 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 SMURF2Q9HAU4 748 aa23.13■■□□□ 1.29
TRIM54-201ENST00000296098 GPX2P18283 190 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 TIA1P31483 386 aaKnown RBP eCLIP23.12■■□□□ 1.29
TRIM54-201ENST00000296098 CDK9P50750 372 aaKnown RBP23.12■■□□□ 1.29
TRIM54-201ENST00000296098 VMACQ2NL98 169 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 HKDC1Q2TB90 917 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 LRRC23Q53EV4 343 aaPredicted RBP23.12■■□□□ 1.29
TRIM54-201ENST00000296098 CRTC3Q6UUV7 619 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 ERN2Q76MJ5 926 aaKnown RBP23.12■■□□□ 1.29
TRIM54-201ENST00000296098 GPR155Q7Z3F1 870 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 GPR141Q7Z602 305 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 ZNF547Q8IVP9 402 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 ZZZ3Q8IYH5 903 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 HS3ST5Q8IZT8 346 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 PJA1Q8NG27 643 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 OR9A1PQ8NGU1 263 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 SGPP1Q9BX95 441 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 ITM2CQ9NQX7 267 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 AASDHPPTQ9NRN7 309 aa23.12■■□□□ 1.29
TRIM54-201ENST00000296098 E2F6O75461 281 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 PAPLNO95428 1278 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 C1QCP02747 245 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 SLC5A2P31639 672 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 GPM6BQ13491 265 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 CATSPEREQ5SY80 951 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 CPTPQ5TA50 214 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 C7orf61Q8IZ16 206 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 TERB1Q8NA31 727 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 WDR34Q96EX3 536 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 EFCAB11Q9BUY7 163 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 SH2B3Q9UQQ2 575 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 C17orf113A0A1B0GUU1 675 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 ZNF682O95780 498 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 NPPBP16860 134 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 ZNF8P17098 575 aaPredicted RBP23.11■■□□□ 1.29
TRIM54-201ENST00000296098 SHMT2P34897 504 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 DCTP40126 519 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 MAGEA2P43356 314 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 SLBPQ14493 270 aaKnown RBP eCLIP23.11■■□□□ 1.29
TRIM54-201ENST00000296098 C10orf62Q5T681 223 aaPredicted RBP23.11■■□□□ 1.29
TRIM54-201ENST00000296098 TTC23Q5W5X9 447 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 CPZQ66K79 652 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 CAMKMTQ7Z624 323 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 UBE2Q1Q7Z7E8 422 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 MMAAQ8IVH4 418 aaKnown RBP23.11■■□□□ 1.29
TRIM54-201ENST00000296098 PGBD3Q8N328 593 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 ST13P5Q8NFI4 369 aaPredicted RBP23.11■■□□□ 1.29
TRIM54-201ENST00000296098 CXorf40AQ8TE69 158 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 FGF13Q92913 245 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 MBOAT4Q96T53 435 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 BTNL2Q9UIR0 455 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 BTBD3Q9Y2F9 522 aa23.11■■□□□ 1.29
TRIM54-201ENST00000296098 CHD7Q9P2D1 2997 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 GNG14A0A1W2PPG7 69 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 MGAT4DA6NG13 374 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 YY2O15391 372 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 VEGFDO43915 354 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 PCDH7O60245 1069 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 POP7O75817 140 aaKnown RBP23.1■■□□□ 1.29
TRIM54-201ENST00000296098 KCNK5O95279 499 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 PAGE2BQ5JRK9 111 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 DSG4Q86SJ6 1040 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 ZDHHC21Q8IVQ6 265 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 OR2L2Q8NH16 312 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 ING2Q9H160 280 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 DPEP2Q9H4A9 486 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 GPR34Q9UPC5 381 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 PCDHB11Q9Y5F2 797 aa23.1■■□□□ 1.29
TRIM54-201ENST00000296098 GABRR3A8MPY1 467 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 C1QTNF3-AMACRE9PGA6 284 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 NOBOXO60393 691 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 CA3P07451 260 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 C1GALT1C1LP0DN25 315 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 FSHRP23945 695 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 NFE2L1Q14494 772 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 ZBED5Q49AG3 693 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 ANXA8L1Q5VT79 327 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 TMEM179BQ7Z7N9 219 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 C8orf59Q8N0T1 100 aaPredicted RBP23.09■■□□□ 1.29
TRIM54-201ENST00000296098 ZNF555Q8NEP9 628 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 VPS37AQ8NEZ2 397 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 OR10Q1Q8NGQ4 319 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 SUSD6Q92537 303 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 HIC2Q96JB3 615 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 SH3GL3Q99963 347 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 NPLQ9BXD5 320 aaPredicted RBP23.09■■□□□ 1.29
TRIM54-201ENST00000296098 EHD1Q9H4M9 534 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 SFXN1Q9H9B4 322 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 FAM118AQ9NWS6 357 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 IFT80Q9P2H3 777 aaPredicted RBP23.09■■□□□ 1.29
TRIM54-201ENST00000296098 ERVK-11Q9UQG0 969 aa23.09■■□□□ 1.29
TRIM54-201ENST00000296098 KIF26AQ9ULI4 1882 aaPredicted RBP23.09■■□□□ 1.29
TRIM54-201ENST00000296098 PIPSLA2A3N6 862 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms