RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SF1Q15637 639 aaKnown RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 OR4K2Q8NGD2 314 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 FEM1CQ96JP0 617 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ENY2Q9NPA8 101 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CD93Q9NPY3 652 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 GLYATL1P3A0A0U1RQE8 302 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 GOT2P00505 430 aaKnown RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ARFRP1Q13795 201 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 RFTN1Q14699 578 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 IFI44LQ53G44 452 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ZC3HC1Q86WB0 502 aaKnown RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 FCRL5Q96RD9 977 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 GPR21Q99679 349 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 OSER1Q9NX31 292 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 KCTD5Q9NXV2 234 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 RNF6Q9Y252 685 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 PCDHGB7Q9Y5F8 929 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 M0R129 80 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 FARS2O95363 451 aaKnown RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 SMPD1P17405 629 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 IMPDH1P20839 514 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 HTR2BP41595 481 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 FAPQ12884 760 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 PUM1Q14671 1186 aaKnown RBP eCLIP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 TMEM53Q6P2H8 277 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ZNF709Q8N972 641 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ZSCAN1Q8NBB4 408 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CCDC106Q9BWC9 280 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ATXN7L3Q14CW9 347 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 PON3Q15166 354 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 FAM110CQ1W6H9 321 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CENPSQ8N2Z9 138 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 HMCESQ96FZ2 354 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 SEC14L4Q9UDX3 406 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 RIMKLBQ9ULI2 386 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CEP250Q9BV73 2442 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 KDM4FA0A1W2PPD8 638 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 FAM234BA2RU67 622 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ARPC2O15144 300 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 GNRH1P01148 92 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 PROZP22891 400 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CLCN7P51798 805 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CHAF1BQ13112 559 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 SLC16A9Q7RTY1 509 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ARMC5Q96C12 935 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 IL4I1Q96RQ9 567 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 BARD1Q99728 777 aaKnown RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CALML5Q9NZT1 146 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 COPS7AQ9UBW8 275 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 SCN1AP35498 2009 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CACNB4O00305 520 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 YBEYP58557 167 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ZNF33AQ06730 810 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 MERTKQ12866 999 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 UGT8Q16880 541 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ATAD3CQ5T2N8 411 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CXCL17Q6UXB2 119 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CERS6Q6ZMG9 384 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CEP97Q8IW35 865 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ZNF565Q8N9K5 539 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 C9orf43Q8TAL5 461 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 JSRP1Q96MG2 331 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 FIZ1Q96SL8 496 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 TBX5Q99593 518 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 TREX2Q9BQ50 279 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 PCDHB9Q9Y5E1 797 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 MT-CYBP00156 380 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-201ENST00000295550 TSTQ16762 297 aaKnown RBP9.6□□□□□ -0.87
COL6A3-201ENST00000295550 LNX2Q8N448 690 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 PLD4Q96BZ4 506 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 GPR22Q99680 433 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 LRRC3Q9BY71 257 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 IL7P13232 177 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 DNAJA1P31689 397 aaKnown RBP9.6□□□□□ -0.87
COL6A3-201ENST00000295550 IL10RBQ08334 325 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 COX18Q8N8Q8 333 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 POC1BQ8TC44 478 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 SLC5A7Q9GZV3 580 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 DNAJB9Q9UBS3 223 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 AGAP5A6NIR3 686 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 MEN1O00255 615 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 PAFAH1B3Q15102 231 aaKnown RBP9.6□□□□□ -0.87
COL6A3-201ENST00000295550 ZFAND2BQ8WV99 257 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 GEMIN6Q8WXD5 167 aaKnown RBP9.6□□□□□ -0.87
COL6A3-201ENST00000295550 SYT11Q9BT88 431 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 IPPKQ9H8X2 491 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 GADD45GO95257 159 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 EFNA1P20827 205 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-201ENST00000295550 HTR2AP28223 471 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 ARL9Q6T311 187 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 ARSKQ6UWY0 536 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 C15orf39Q6ZRI6 1047 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 VTCN1Q7Z7D3 282 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 GLB1L3Q8NCI6 653 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-201ENST00000295550 ISOC1Q96CN7 298 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 TFB2MQ9H5Q4 396 aaKnown RBP9.6□□□□□ -0.87
COL6A3-201ENST00000295550 TLX3O43711 291 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-201ENST00000295550 SSX4O60224 188 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 TLR5O60602 858 aa9.6□□□□□ -0.87
COL6A3-201ENST00000295550 USP2O75604 605 aaPredicted RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms