RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 ZDHHC24Q6UX98 284 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 VN1R4Q7Z5H5 301 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 CEP97Q8IW35 865 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 PALM2Q8IXS6 379 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 SHISA5Q8N114 240 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 GALNT16Q8N428 558 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 PYROXD1Q8WU10 500 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 COL26A1Q96A83 441 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 ALKBH8Q96BT7 664 aaKnown RBP13.73□□□□□ -0.21
HMGN3-201ENST00000275036 PYCR2Q96C36 320 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 PDLIM5Q96HC4 596 aaKnown RBP13.73□□□□□ -0.21
HMGN3-201ENST00000275036 IP6K3Q96PC2 410 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 ZNF552Q9H707 407 aaPredicted RBP13.73□□□□□ -0.21
HMGN3-201ENST00000275036 ZBTB20Q9HC78 741 aaPredicted RBP13.73□□□□□ -0.21
HMGN3-201ENST00000275036 TMEM184CQ9NVA4 438 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 ZNF451Q9Y4E5 1061 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 HS3ST3B1Q9Y662 390 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 DOPEY2Q9Y3R5 2298 aa13.73□□□□□ -0.21
HMGN3-201ENST00000275036 IGLV3-12A0A075B6K2 115 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 FEZF1A0PJY2 475 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 TTLL8A6PVC2 850 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 AGPSO00116 658 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 CDC7O00311 574 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 EIF3HO15372 352 aaKnown RBP eCLIP13.72□□□□□ -0.21
HMGN3-201ENST00000275036 NPPBP16860 134 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 MMP11P24347 488 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 PLTPP55058 493 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 GPX6P59796 221 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 KLC1Q07866 573 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 VWA2Q5GFL6 755 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 PRMT9Q6P2P2 845 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 KIRREL2Q6UWL6 708 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 LCTLQ6UWM7 567 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 AMER3Q8N944 861 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 OR56A3Q8NH54 315 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 FBXO25Q8TCJ0 367 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 STT3BQ8TCJ2 826 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 ANKRD49Q8WVL7 239 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 RERGQ96A58 199 aaPredicted RBP13.72□□□□□ -0.21
HMGN3-201ENST00000275036 VPS39Q96JC1 886 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 OR4K3Q96R72 315 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 MACROD1Q9BQ69 325 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 PCBD2Q9H0N5 130 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 RHOJQ9H4E5 214 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 ARL15Q9NXU5 204 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 UTP6Q9NYH9 597 aaKnown RBP13.72□□□□□ -0.21
HMGN3-201ENST00000275036 CDC23Q9UJX2 597 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 MAP4K5Q9Y4K4 846 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 PCDHGB7Q9Y5F8 929 aa13.72□□□□□ -0.21
HMGN3-201ENST00000275036 TCRBV9S1A1TA0A576 114 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 NPEPPSL1A6NEC2 478 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 PEX12O00623 359 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 LCMT2O60294 686 aaKnown RBP13.71□□□□□ -0.21
HMGN3-201ENST00000275036 WISP3O95389 354 aaPredicted RBP13.71□□□□□ -0.21
HMGN3-201ENST00000275036 GUCA1CO95843 209 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 HIST1H2AGP0C0S8 130 aaPredicted RBP13.71□□□□□ -0.21
HMGN3-201ENST00000275036 ZGLP1P0C6A0 271 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 CDH1P12830 882 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 HIST1H2ADP20671 130 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 FBLP22087 321 aaKnown RBP13.71□□□□□ -0.21
HMGN3-201ENST00000275036 BCL6P41182 706 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 AP1S2P56377 157 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 DSG2Q14126 1118 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 SYT16Q17RD7 645 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 VWA5B1Q5TIE3 1220 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 GARNL3Q5VVW2 1013 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 PRSS41Q7RTY9 318 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 LAPTM4BQ86VI4 370 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 C17orf64Q86WR6 236 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 PRSS58Q8IYP2 241 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 CPT1CQ8TCG5 803 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 FBXL8Q96CD0 374 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 HIST1H2AHQ96KK5 128 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 FER1L6-AS2Q96M78 137 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 C16orf45Q96MC5 204 aaPredicted RBP13.71□□□□□ -0.21
HMGN3-201ENST00000275036 HIST1H2AJQ99878 128 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 H2AFJQ9BTM1 129 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 CAB39LQ9H9S4 337 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 NSMCE4AQ9NXX6 385 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 ZNF282Q9UDV7 671 aaPredicted RBP13.71□□□□□ -0.21
HMGN3-201ENST00000275036 FBXL4Q9UKA2 621 aa13.71□□□□□ -0.21
HMGN3-201ENST00000275036 NXT1Q9UKK6 140 aaKnown RBP13.71□□□□□ -0.21
HMGN3-201ENST00000275036 MTO1Q9Y2Z2 717 aaKnown RBP13.71□□□□□ -0.21
HMGN3-201ENST00000275036 UTP11Q9Y3A2 253 aaKnown RBP13.71□□□□□ -0.21
HMGN3-201ENST00000275036 NBPF19A0A087WUL8 3843 aa13.71□□□□□ -0.22
HMGN3-201ENST00000275036 KCNE1BA0A087WTH5 132 aa13.7□□□□□ -0.22
HMGN3-201ENST00000275036 A0A0A6YYC8 382 aaPredicted RBP13.7□□□□□ -0.22
HMGN3-201ENST00000275036 FAM159BA6NKW6 160 aa13.7□□□□□ -0.22
HMGN3-201ENST00000275036 I3L1I5 382 aaPredicted RBP13.7□□□□□ -0.22
HMGN3-201ENST00000275036 DPM1O60762 260 aa13.7□□□□□ -0.22
HMGN3-201ENST00000275036 ENO2P09104 434 aaPredicted RBP13.7□□□□□ -0.22
HMGN3-201ENST00000275036 GNLYP22749 145 aa13.7□□□□□ -0.22
HMGN3-201ENST00000275036 CCND1P24385 295 aa13.7□□□□□ -0.22
HMGN3-201ENST00000275036 HRH2P25021 359 aa13.7□□□□□ -0.22
HMGN3-201ENST00000275036 SLC26A3P40879 764 aa13.7□□□□□ -0.22
HMGN3-201ENST00000275036 EFNA3P52797 238 aa13.7□□□□□ -0.22
HMGN3-201ENST00000275036 SOX8P57073 446 aa13.7□□□□□ -0.22
HMGN3-201ENST00000275036 RPS15AP62244 130 aaKnown RBP13.7□□□□□ -0.22
HMGN3-201ENST00000275036 SLC7A5Q01650 507 aa13.7□□□□□ -0.22
HMGN3-201ENST00000275036 MEF2AQ02078 507 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms