RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TNFP01375 233 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 HOXB2P14652 356 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 AP1S2P56377 157 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 DCDC1P59894 354 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 OR2T5Q6IEZ7 315 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 C22orf39Q6P5X5 142 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 LRRC70Q7Z2Q7 622 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 METTL27Q8N6F8 245 aaPredicted RBP11.15□□□□□ -0.63
USP53-201ENST00000274030 PLA2G15Q8NCC3 412 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 OR4K1Q8NGD4 311 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 OR2T29Q8NH02 315 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 DNAJA3Q96EY1 480 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 CCDC115Q96NT0 180 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 GPR22Q99680 433 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 HERC2P3Q9BVR0 1158 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 BTBD1Q9H0C5 482 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 MOCS1Q9NZB8 636 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 B4GALT6Q9UBX8 382 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 INSL5Q9Y5Q6 135 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 SLIT3O75094 1523 aa11.15□□□□□ -0.63
USP53-201ENST00000274030 SH3D21A4FU49 640 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 FGF18O76093 207 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 RORCP51449 518 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 GBX2P52951 348 aaPredicted RBP11.14□□□□□ -0.63
USP53-201ENST00000274030 TPTEP56180 551 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 PITX1P78337 314 aaPredicted RBP11.14□□□□□ -0.63
USP53-201ENST00000274030 ADAM17P78536 824 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 ARFRP1Q13795 201 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 DUOXA1Q1HG43 343 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 CNPY1Q3B7I2 92 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 ZNF648Q5T619 568 aaPredicted RBP11.14□□□□□ -0.63
USP53-201ENST00000274030 CNKSR3Q6P9H4 555 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 TMIGD1Q6UXZ0 262 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 LGR4Q9BXB1 951 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 FAM72CH0Y354 149 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 EIF1AYO14602 144 aaKnown RBP11.14□□□□□ -0.63
USP53-201ENST00000274030 KCNE1P15382 129 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 OR3A3P47888 321 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 OR3A2P47893 321 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 RAB2AP61019 212 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 GALNT2Q10471 571 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 LASP1Q14847 261 aaKnown RBP11.14□□□□□ -0.63
USP53-201ENST00000274030 PAFAH1B3Q15102 231 aaKnown RBP11.14□□□□□ -0.63
USP53-201ENST00000274030 FAM72AQ5TYM5 149 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 FAM72DQ6L9T8 149 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 FAM72BQ86X60 149 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 PDPRQ8NCN5 879 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 SMPDL3AQ92484 453 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 RAB8BQ92930 207 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 SCAMP4Q969E2 229 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 ADAD1Q96M93 576 aaKnown RBP11.14□□□□□ -0.63
USP53-201ENST00000274030 NPY6RQ99463 290 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 SPATA9Q9BWV2 254 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 CCDC59Q9P031 241 aaKnown RBP11.14□□□□□ -0.63
USP53-201ENST00000274030 MYOCOSA0A1B0GUC4 107 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 GRXCR1A8MXD5 290 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 C6orf47O95873 294 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 S100A6P06703 90 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 FECHP22830 423 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 HSD17B2P37059 387 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 BNIP3Q12983 259 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 GPR17Q13304 367 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 MAPK14Q16539 360 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 USP43Q70EL4 1123 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 MARCH9Q86YJ5 346 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 KLHL36Q8N4N3 616 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 C1orf216Q8TAB5 229 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 ZNF461Q8TAF7 563 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 ZNF860A6NHJ4 632 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 FZD9O00144 591 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 KDELR3O43731 214 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 GJB5O95377 273 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 CLIC3O95833 236 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 SERPINA3P01011 423 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 ZNF20P17024 532 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 EDNRAP25101 427 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 ECHS1P30084 290 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 SCNN1AP37088 669 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 STC1P52823 247 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 VBP1P61758 197 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 TGFBIQ15582 683 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 SH3D19Q5HYK7 790 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 QSOX2Q6ZRP7 698 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 SIAH1Q8IUQ4 282 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 AQP11Q8NBQ7 271 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 CAMKVQ8NCB2 501 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 TPT1P8Q9HAU6 139 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 EDDM13A0A1B0GTR0 161 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 FAM170BA6NMN3 283 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 BLOC1S5-TXNDC5H3BN57 136 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 J3QLW9 94 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 LEFTY2O00292 366 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 TLX2O43763 284 aaPredicted RBP11.14□□□□□ -0.63
USP53-201ENST00000274030 ZNF19P17023 458 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 ZNF3P17036 446 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 PDX1P52945 283 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 PPP1R3AQ16821 1122 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 CDCA2Q69YH5 1023 aaPredicted RBP11.14□□□□□ -0.63
USP53-201ENST00000274030 LMX1AQ8TE12 382 aa11.14□□□□□ -0.63
USP53-201ENST00000274030 GEMIN6Q8WXD5 167 aaKnown RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms