RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 C1orf61Q13536 156 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 ZNF423Q2M1K9 1284 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 VPS26BQ4G0F5 336 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 REP15Q6BDI9 236 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 NOXRED1Q6NXP6 359 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 C11orf74Q86VG3 221 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 RBM12BQ8IXT5 1001 aaKnown RBP13.56□□□□□ -0.24
SS18-201ENST00000269137 ADGRF3Q8IZF5 1079 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 DEFB107AQ8IZN7 70 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 PGAM4Q8N0Y7 254 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 NAGSQ8N159 534 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 SDR16C5Q8N3Y7 309 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 PCYOX1LQ8NBM8 494 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 GLB1L3Q8NCI6 653 aaPredicted RBP13.56□□□□□ -0.24
SS18-201ENST00000269137 CHTF18Q8WVB6 975 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 SLC22A18Q96BI1 424 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 SPDL1Q96EA4 605 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 PRAP1Q96NZ9 151 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 NPAS2Q99743 824 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 THTPAQ9BU02 230 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 SRMSQ9H3Y6 488 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 SIRT5Q9NXA8 310 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 SPHK1Q9NYA1 384 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 RUVBL1Q9Y265 456 aaKnown RBP13.56□□□□□ -0.24
SS18-201ENST00000269137 DLGAP4Q9Y2H0 992 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 GOLGA4Q13439 2230 aaKnown RBP13.56□□□□□ -0.24
SS18-201ENST00000269137 CACNA1EQ15878 2313 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 IGKV1-8A0A0C4DH67 115 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 FAM221BA6H8Z2 402 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 MRASO14807 208 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 ETHE1O95571 254 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 CLDN8P56748 225 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 ACSM2AQ08AH3 577 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 GPR18Q14330 331 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 PTGR1Q14914 329 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 KIR2DS3Q14952 304 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 SPIN4Q56A73 249 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 ACSM2BQ68CK6 577 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 GALNT18Q6P9A2 607 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 CYB5D1Q6P9G0 228 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 VN1R5Q7Z5H4 357 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 GKN2Q86XP6 184 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 FAM13CQ8NE31 585 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 FAM46DQ8NEK8 389 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 OR2L3Q8NG85 312 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 SLC37A2Q8TED4 501 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 ZDHHC1Q8WTX9 485 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 ROPN1LQ96C74 230 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 APOLD1Q96LR9 279 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 SERPINI1Q99574 410 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 MRPS30Q9NP92 439 aaKnown RBP13.55□□□□□ -0.24
SS18-201ENST00000269137 TMEM184CQ9NVA4 438 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 SPASTQ9UBP0 616 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 PRPF19Q9UMS4 504 aaKnown RBP13.55□□□□□ -0.24
SS18-201ENST00000269137 SNRNP200O75643 2136 aaKnown RBP13.55□□□□□ -0.24
SS18-201ENST00000269137 A0A088AWK7 358 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 BTN3A3O00478 584 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 ANGPT2O15123 496 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 SDC1P18827 310 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 PTX3P26022 381 aaPredicted RBP13.55□□□□□ -0.24
SS18-201ENST00000269137 CMPK1P30085 196 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 CSNK1EP49674 416 aaKnown RBP13.55□□□□□ -0.24
SS18-201ENST00000269137 HNRNPKP61978 463 aaKnown RBP eCLIP13.55□□□□□ -0.24
SS18-201ENST00000269137 RBBP5Q15291 538 aaKnown RBP13.55□□□□□ -0.24
SS18-201ENST00000269137 SF1Q15637 639 aaKnown RBP13.55□□□□□ -0.24
SS18-201ENST00000269137 PGM2L1Q6PCE3 622 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 SLC9B2Q86UD5 537 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 RETREG3Q86VR2 466 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 C1orf210Q8IVY1 113 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 SCUBE1Q8IWY4 988 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 ULK2Q8IYT8 1036 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 MAML2Q8IZL2 1156 aaPredicted RBP13.55□□□□□ -0.24
SS18-201ENST00000269137 AVL9Q8NBF6 648 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 PATE1Q8WXA2 126 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 ZBTB18Q99592 522 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 SARGQ9BW04 601 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 DPY30Q9C005 99 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 WDR41Q9HAD4 459 aa13.55□□□□□ -0.24
SS18-201ENST00000269137 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.55□□□□□ -0.24
SS18-201ENST00000269137 TRBC2A0A5B9 178 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 C9JVG2 144 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 EEDO75530 441 aaKnown RBP13.54□□□□□ -0.24
SS18-201ENST00000269137 MYO1DO94832 1006 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 C21orf59P57076 290 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 PLCL1Q15111 1095 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 TLR1Q15399 786 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 C8orf82Q6P1X6 216 aaPredicted RBP13.54□□□□□ -0.24
SS18-201ENST00000269137 ARMCX6Q7L4S7 300 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.54□□□□□ -0.24
SS18-201ENST00000269137 ANKRD53Q8N9V6 530 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 TTLQ8NG68 377 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 GAB3Q8WWW8 586 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 JPH3Q8WXH2 748 aaPredicted RBP13.54□□□□□ -0.24
SS18-201ENST00000269137 SLC45A3Q96JT2 553 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 CLMPQ9H6B4 373 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 ERVMER34-1Q9H9K5 563 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 SLC6A20Q9NP91 592 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 MAP10Q9P2G4 905 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 BAIAP2L1Q9UHR4 511 aa13.54□□□□□ -0.24
SS18-201ENST00000269137 SNX7Q9UNH6 387 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms