RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 IMPA1P29218 277 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 SLC26A3P40879 764 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 MPP1Q00013 466 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 HIF1AQ16665 826 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 HKDC1Q2TB90 917 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 TUBB8Q3ZCM7 444 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 IRAK1BP1Q5VVH5 260 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 GARNL3Q5VVW2 1013 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 CPNE9Q8IYJ1 553 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 PRSS58Q8IYP2 241 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 SLC35F6Q8N357 371 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 AMER3Q8N944 861 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 C2CD4AQ8NCU7 369 aaPredicted RBP9.25□□□□□ -0.93
VPS41-201ENST00000265745 RERGQ96A58 199 aaPredicted RBP9.25□□□□□ -0.93
VPS41-201ENST00000265745 MVB12AQ96EY5 273 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 THOC3Q96J01 351 aaKnown RBP9.25□□□□□ -0.93
VPS41-201ENST00000265745 LMF1Q96S06 567 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 WDR77Q9BQA1 342 aaPredicted RBP9.25□□□□□ -0.93
VPS41-201ENST00000265745 FAM167BQ9BTA0 163 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 SLC29A3Q9BZD2 475 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 LHPPQ9H008 270 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 ILKAPQ9H0C8 392 aaPredicted RBP9.25□□□□□ -0.93
VPS41-201ENST00000265745 IARS2Q9NSE4 1012 aaKnown RBP9.25□□□□□ -0.93
VPS41-201ENST00000265745 CUEDC1Q9NWM3 386 aaPredicted RBP9.25□□□□□ -0.93
VPS41-201ENST00000265745 TRPC4Q9UBN4 977 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 SNX12Q9UMY4 172 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 RUVBL1Q9Y265 456 aaKnown RBP9.25□□□□□ -0.93
VPS41-201ENST00000265745 CSAG2Q9Y5P2 127 aa9.25□□□□□ -0.93
VPS41-201ENST00000265745 COPG1Q9Y678 874 aaKnown RBP9.25□□□□□ -0.93
VPS41-201ENST00000265745 KCNE1BA0A087WTH5 132 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 A0A1W2PQ72 361 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 IDSB3KWA1 339 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 H7BY64 318 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 TXNDC9O14530 226 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 HAT1O14929 419 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 FOXS1O43638 330 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 NDUFB5O43674 189 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 TTC4O95801 387 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 HPP00738 406 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 RNF224P0DH78 156 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 ACPPP15309 386 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 PGAM1P18669 254 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 FBLP22087 321 aaKnown RBP9.24□□□□□ -0.93
VPS41-201ENST00000265745 HRH2P25021 359 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 IVDP26440 423 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 GLRBP48167 497 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 EMP2P54851 167 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 PTK6Q13882 451 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 FAM53BQ14153 422 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 CRYMQ14894 314 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 PPP1R7Q15435 360 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 COX20Q5RI15 118 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 THEMIS2Q5TEJ8 643 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 UBE2R2Q712K3 238 aaPredicted RBP9.24□□□□□ -0.93
VPS41-201ENST00000265745 NDUFAF7Q7L592 441 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 PIWIL4Q7Z3Z4 852 aaKnown RBP9.24□□□□□ -0.93
VPS41-201ENST00000265745 ADCK2Q7Z695 626 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 KCNMB4Q86W47 210 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 PLD3Q8IV08 490 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 IGDCC3Q8IVU1 814 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 DNAJB14Q8TBM8 379 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 MCOLN3Q8TDD5 553 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 PPP4R1Q8TF05 950 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 SSC4DQ8WTU2 575 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 EEF1AKMT1Q8WVE0 214 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 SLCO2A1Q92959 643 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 C8orf44Q96CB5 159 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 MMABQ96EY8 250 aaPredicted RBP9.24□□□□□ -0.93
VPS41-201ENST00000265745 CCDC138Q96M89 665 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 PRAP1Q96NZ9 151 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 NDNQ99608 321 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 EBNA1BP2Q99848 306 aaKnown RBP9.24□□□□□ -0.93
VPS41-201ENST00000265745 YIPF2Q9BWQ6 316 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 TGIF2Q9GZN2 237 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 ZNF160Q9HCG1 818 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 ABCF3Q9NUQ8 709 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 TMEM184CQ9NVA4 438 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 PCYOX1Q9UHG3 505 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 PDE10AQ9Y233 779 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 NTNG1Q9Y2I2 539 aa9.24□□□□□ -0.93
VPS41-201ENST00000265745 SPTBN1Q01082 2364 aaKnown RBP9.23□□□□□ -0.93
VPS41-201ENST00000265745 A0A0A6YYC8 382 aaPredicted RBP9.23□□□□□ -0.93
VPS41-201ENST00000265745 ANKUB1A6NFN9 424 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 WIPF3A6NGB9 483 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 I3L1I5 382 aaPredicted RBP9.23□□□□□ -0.93
VPS41-201ENST00000265745 DNALI1O14645 258 aaPredicted RBP9.23□□□□□ -0.93
VPS41-201ENST00000265745 MAP2K7O14733 419 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 FFAR3O14843 346 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 GPR42O15529 346 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 P2RX6O15547 441 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 PRPF4O43172 522 aaKnown RBP eCLIP9.23□□□□□ -0.93
VPS41-201ENST00000265745 ZSCAN12O43309 604 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 BANF1O75531 89 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 KLHL18O94889 574 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 AHSGP02765 367 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 ANXA5P08758 320 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 COX6A1P12074 109 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 EIF1AXP47813 144 aaKnown RBP9.23□□□□□ -0.93
VPS41-201ENST00000265745 CDKN2DP55273 166 aa9.23□□□□□ -0.93
VPS41-201ENST00000265745 SNRPNP63162 240 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms