RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MIOSQ9NXC5 875 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 TVP23BQ9NYZ1 205 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 FCF1Q9Y324 198 aaKnown RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 SPIN1Q9Y657 262 aaPredicted RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 ZFC3H1O60293 1989 aaKnown RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 SCN1AP35498 2009 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 ADAMTSL1Q8N6G6 1762 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 NT5C1B-RDH14C9J2C7 533 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 PRPS2P11908 318 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 PRKAG1P54619 331 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 CSNK2BP67870 215 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 ABATP80404 500 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 DUSP4Q13115 394 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 GTF2IRD2BQ6EKJ0 949 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 GTF2IRD2Q86UP8 949 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 ZNF548Q8NEK5 533 aaPredicted RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 MBOAT4Q96T53 435 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 CENPOQ9BU64 300 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 TEX12Q9BXU0 123 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 SERHL2Q9H4I8 314 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 SERHLQ9NQF3 203 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 GPRC5BQ9NZH0 403 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 ASB1Q9Y576 335 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 SHANK3Q9BYB0 1731 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 CCNB2O95067 398 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 GADD45GO95257 159 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 CD72P21854 359 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 VMACQ2NL98 169 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 WSCD2Q2TBF2 565 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 CARD16Q5EG05 197 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 LRRC73Q5JTD7 316 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 LCN1P1Q5VSP4 162 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 SHQ1Q6PI26 577 aaKnown RBP10.72□□□□□ -0.69
CLN3-244ENST00000636147 ASB18Q6ZVZ8 466 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 TBC1D17Q9HA65 648 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 ABCB8Q9NUT2 735 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 SLC22A14Q9Y267 594 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 TRPV2Q9Y5S1 764 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 FADS2P1A8MWK0 482 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 B3GALT4O96024 378 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 SPNP16150 400 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 ITGA2P17301 1181 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 HTR7P34969 479 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 DAPP51397 102 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 RPS7P62081 194 aaKnown RBP10.72□□□□□ -0.69
CLN3-244ENST00000636147 MRPS6P82932 125 aaKnown RBP10.72□□□□□ -0.69
CLN3-244ENST00000636147 PPP2R2BQ00005 443 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 CACNG1Q06432 222 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 NKG7Q16617 165 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 HKDC1Q2TB90 917 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 LIPKQ5VXJ0 399 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 CPZQ66K79 652 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 ATG9BQ674R7 924 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 LRRTM3Q86VH5 581 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 CCDC28AQ8IWP9 274 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 CLECL1Q8IZS7 167 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 GHDCQ8N2G8 530 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 POF1BQ8WVV4 589 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 DHRS1Q96LJ7 313 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 CAMKK2Q96RR4 588 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 EMILIN2Q9BXX0 1053 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 ENOPH1Q9UHY7 261 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 ANKRD66B4E2M5 251 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 SAP18O00422 153 aaKnown RBP10.72□□□□□ -0.69
CLN3-244ENST00000636147 OR56A5P0C7T3 313 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 TGM1P22735 817 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 HOXD11P31277 338 aaPredicted RBP10.72□□□□□ -0.69
CLN3-244ENST00000636147 RYKP34925 604 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 NAE1Q13564 534 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 VEPH1Q14D04 833 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 IFI44LQ53G44 452 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 RUNDC3AQ59EK9 446 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.72□□□□□ -0.69
CLN3-244ENST00000636147 DLEU7Q6UYE1 221 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 USP51Q70EK9 711 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 SLC5A8Q8N695 610 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 OR10T2Q8NGX3 314 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 RASSF5Q8WWW0 418 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 JPH3Q8WXH2 748 aaPredicted RBP10.72□□□□□ -0.69
CLN3-244ENST00000636147 DNASE1L2Q92874 299 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 VMP1Q96GC9 406 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 DUSP26Q9BV47 211 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 CCSER2Q9H7U1 834 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 RANGRFQ9HD47 186 aaPredicted RBP10.72□□□□□ -0.69
CLN3-244ENST00000636147 IL1RAPQ9NPH3 570 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 TLR6Q9Y2C9 796 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 GPSM3Q9Y4H4 160 aa10.72□□□□□ -0.69
CLN3-244ENST00000636147 ARID1BQ8NFD5 2236 aaPredicted RBP10.72□□□□□ -0.69
CLN3-244ENST00000636147 NINQ8N4C6 2090 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 GSAPA4D1B5 854 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 CENPBD1B2RD01 187 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 CHRNB1P11230 501 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 ANXA8P13928 327 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 MAPK12P53778 367 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 BNC1Q01954 994 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 HNRNPA0Q13151 305 aaKnown RBP10.71□□□□□ -0.69
CLN3-244ENST00000636147 TUSC3Q13454 348 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 PROX2Q3B8N5 592 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 KLHL12Q53G59 568 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms