RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 NSG1A0A0A6YYJ2 146 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 TCRBV7S3A2A0A539 114 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 EIF3FO00303 357 aaPredicted RBP17.53■□□□□ 0.4
CLN3-241ENST00000635861 CYC1P08574 325 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 ANXA5P08758 320 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 SLC26A3P40879 764 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 CLCN7P51798 805 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 DHX34Q14147 1143 aaKnown RBP17.53■□□□□ 0.4
CLN3-241ENST00000635861 FAM53BQ14153 422 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 HIST2H2BCQ6DN03 193 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 CASC4Q6P4E1 433 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 SUSD1Q6UWL2 747 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 LURAP1LQ8IV03 231 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 PRELID2Q8N945 189 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 MCUQ8NE86 351 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 GRHL3Q8TE85 626 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 CNDP1Q96KN2 507 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 OR2A5Q96R48 311 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 ZNF160Q9HCG1 818 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 RIC8BQ9NVN3 520 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 TAC3Q9UHF0 121 aa17.53■□□□□ 0.4
CLN3-241ENST00000635861 RUVBL1Q9Y265 456 aaKnown RBP17.53■□□□□ 0.4
CLN3-241ENST00000635861 IGKV1-8A0A0C4DH67 115 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 DYTNA2CJ06 578 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 SDR42E2A6NKP2 422 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 IDSB3KWA1 339 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 E2F3O00716 465 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 NRP2O60462 931 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 CLDN1O95832 211 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 SERPINA7P05543 415 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 COX6A1P12074 109 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 HRH2P25021 359 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 EMP2P54851 167 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 GPS1Q13098 491 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 THOC5Q13769 683 aaKnown RBP17.52■□□□□ 0.4
CLN3-241ENST00000635861 VWA2Q5GFL6 755 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 ZNF470Q6ECI4 717 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 FAM180AQ6UWF9 173 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 CAND1Q86VP6 1230 aaKnown RBP17.52■□□□□ 0.4
CLN3-241ENST00000635861 REXO1L1PQ8IX06 675 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 DTWD1Q8N5C7 304 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 CALML6Q8TD86 181 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 PKP4Q99569 1192 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 DRC3Q9H069 523 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 TRPC4Q9UBN4 977 aa17.52■□□□□ 0.4
CLN3-241ENST00000635861 LOC102723996A0A087X1L8 192 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 CTAGE9A4FU28 777 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 E7ENX8 843 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 GFYI3L273 518 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 ZBTB14O43829 449 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 BMP10O95393 424 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 SLC16A8O95907 504 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 KRT14P02533 472 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 PRR35P0CG20 571 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 ICAM2P13598 275 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 SOX11P35716 441 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 SKIV2L2P42285 1042 aaKnown RBP17.51■□□□□ 0.39
CLN3-241ENST00000635861 YBX1P67809 324 aaKnown RBP17.51■□□□□ 0.39
CLN3-241ENST00000635861 TAP2Q03519 686 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 NDUFA9Q16795 377 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 LRRC8EQ6NSJ5 796 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 BCORP1Q8N888 145 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 ZNF480Q8WV37 535 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 ASB11Q8WXH4 323 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 ZNF669Q96BR6 464 aaPredicted RBP17.51■□□□□ 0.39
CLN3-241ENST00000635861 FAM136AQ96C01 138 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 MMABQ96EY8 250 aaPredicted RBP17.51■□□□□ 0.39
CLN3-241ENST00000635861 SLX1AQ9BQ83 275 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 GALPQ9UBC7 116 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 TSR3Q9UJK0 312 aaKnown RBP17.51■□□□□ 0.39
CLN3-241ENST00000635861 DHRS7Q9Y394 339 aa17.51■□□□□ 0.39
CLN3-241ENST00000635861 SCN3AQ9NY46 2000 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 IGHV1-45A0A0A0MS14 117 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 AVILO75366 819 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 KLHL18O94889 574 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 HEXBP07686 556 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 ARG2P78540 354 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 HKDC1Q2TB90 917 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 LINC00696Q6ZRV3 163 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 PRSS58Q8IYP2 241 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 SLC34A3Q8N130 599 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 ARHGEF39Q8N4T4 335 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 AMER3Q8N944 861 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 HAS2Q92819 552 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 C8orf44Q96CB5 159 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 SERPINB12Q96P63 405 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 RNF32Q9H0A6 362 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 CROCCQ5TZA2 2017 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 MYO7BQ6PIF6 2116 aa17.5■□□□□ 0.39
CLN3-241ENST00000635861 UQCRHLA0A096LP55 91 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 TRAV17A0A0B4J275 112 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 ZCWPW2A0A1B0GU75 182 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 H0YIG0 161 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 SMAPO00193 183 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 UQCRHP07919 91 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 CXCR5P32302 372 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 DCTP40126 519 aa17.49■□□□□ 0.39
CLN3-241ENST00000635861 TSTA3Q13630 321 aaPredicted RBP17.49■□□□□ 0.39
CLN3-241ENST00000635861 TRIP13Q15645 432 aaPredicted RBP17.49■□□□□ 0.39
CLN3-241ENST00000635861 TMEM205Q6UW68 189 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms