RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 LOC102723532A0A0G2JNH3 316 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 FITM1A5D6W6 292 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 C9J4A7 227 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 H0YGG7 62 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 TXNDC9O14530 226 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 TERTO14746 1132 aaKnown RBP19.81■□□□□ 0.76
CLN3-240ENST00000631023 NRP2O60462 931 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 SLU7O95391 586 aaKnown RBP19.81■□□□□ 0.76
CLN3-240ENST00000631023 C2P06681 752 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 ALAS2P22557 587 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 F8A1P23610 371 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 GRK3P35626 688 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 ARF3P61204 181 aaPredicted RBP19.81■□□□□ 0.76
CLN3-240ENST00000631023 DCDP81605 110 aaKnown RBP19.81■□□□□ 0.76
CLN3-240ENST00000631023 RHDQ02161 417 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 FAM83EQ2M2I3 478 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 ZXDCQ2QGD7 858 aaPredicted RBP19.81■□□□□ 0.76
CLN3-240ENST00000631023 PTCHD3Q3KNS1 767 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 OR4N4Q8N0Y3 316 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 TXLNGYQ9BZA5 131 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 STARD5Q9NSY2 213 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 DHCR7Q9UBM7 475 aaKnown RBP19.81■□□□□ 0.76
CLN3-240ENST00000631023 RNF112Q9ULX5 631 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 FARSAQ9Y285 508 aaKnown RBP19.81■□□□□ 0.76
CLN3-240ENST00000631023 CACNA1GO43497 2377 aa19.81■□□□□ 0.76
CLN3-240ENST00000631023 HYKKA2RU49 373 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 RECKO95980 971 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 RAB40ALP0C0E4 278 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 TFEBP19484 476 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 PTPN4P29074 926 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 RPS15AP62244 130 aaKnown RBP19.8■□□□□ 0.76
CLN3-240ENST00000631023 CRTC2Q53ET0 693 aaPredicted RBP19.8■□□□□ 0.76
CLN3-240ENST00000631023 C1orf189Q5VU69 101 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 TTLL10Q6ZVT0 673 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 GSPT2Q8IYD1 628 aaKnown RBP19.8■□□□□ 0.76
CLN3-240ENST00000631023 RHBDF1Q96CC6 855 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 GBP5Q96PP8 586 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 OR2A5Q96R48 311 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 NLNQ9BYT8 704 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 CNOT10Q9H9A5 744 aaKnown RBP19.8■□□□□ 0.76
CLN3-240ENST00000631023 CUTCQ9NTM9 273 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 CD274Q9NZQ7 290 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 DYRK1BQ9Y463 629 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 SCN3AQ9NY46 2000 aa19.8■□□□□ 0.76
CLN3-240ENST00000631023 A0A096LPK6 155 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 A0A1B0GX78 115 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 CCDC189A1A4V9 331 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 NCF1BA6NI72 391 aaPredicted RBP19.79■□□□□ 0.76
CLN3-240ENST00000631023 NCF1CA8MVU1 366 aaPredicted RBP19.79■□□□□ 0.76
CLN3-240ENST00000631023 HAT1O14929 419 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 S100BP04271 92 aaPredicted RBP19.79■□□□□ 0.76
CLN3-240ENST00000631023 CD63P08962 238 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 PIM1P11309 404 aaPredicted RBP19.79■□□□□ 0.76
CLN3-240ENST00000631023 NCF1P14598 390 aaPredicted RBP19.79■□□□□ 0.76
CLN3-240ENST00000631023 CCR8P51685 355 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 EMP3P54852 163 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 CSNK1G2P78368 415 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 SLC29A2Q14542 456 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 OR4D1Q15615 310 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 ZNF385CQ66K41 422 aaPredicted RBP19.79■□□□□ 0.76
CLN3-240ENST00000631023 SULT1C3Q6IMI6 304 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 KLC3Q6P597 504 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 ISCA2Q86U28 154 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 THOC6Q86W42 341 aaKnown RBP19.79■□□□□ 0.76
CLN3-240ENST00000631023 CNPY4Q8N129 248 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 ABHD11Q8NFV4 315 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 PTERQ96BW5 349 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 THAP11Q96EK4 314 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 CCDC77Q9BR77 488 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 ALG9Q9H6U8 611 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 NDOR1Q9UHB4 597 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 GPN3Q9UHW5 284 aaPredicted RBP19.79■□□□□ 0.76
CLN3-240ENST00000631023 MRPS18BQ9Y676 258 aaKnown RBP19.79■□□□□ 0.76
CLN3-240ENST00000631023 KCNE2Q9Y6J6 123 aa19.79■□□□□ 0.76
CLN3-240ENST00000631023 DSCR3O14972 297 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 NKX2-8O15522 239 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 CREG1O75629 220 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 ALDOAP04075 364 aaKnown RBP19.78■□□□□ 0.76
CLN3-240ENST00000631023 CDH1P12830 882 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 DLG1Q12959 904 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 LCN10Q6JVE6 187 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 TBC1D19Q8N5T2 526 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 CSNK1A1LQ8N752 337 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 DCAKDQ8WVC6 231 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 NXNL1Q96CM4 212 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 CATSPER2Q96P56 530 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 OR4K3Q96R72 315 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 ACTL8Q9H568 366 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 ANKZF1Q9H8Y5 726 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 IGSF5Q9NSI5 407 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 WWOXQ9NZC7 414 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 SH2B3Q9UQQ2 575 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 SLC22A14Q9Y267 594 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 KCNE1BA0A087WTH5 132 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 IPO13O94829 963 aaKnown RBP19.78■□□□□ 0.76
CLN3-240ENST00000631023 KLHL2O95198 593 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 ITGB2P05107 769 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 MYBL2P10244 700 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 GCGRP47871 477 aa19.78■□□□□ 0.76
CLN3-240ENST00000631023 CSRP3P50461 194 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms