RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CSNK1G2P78368 415 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 E2F2Q14209 437 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 KCNAB1Q14722 419 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 CATSPEREQ5SY80 951 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 SLCO4C1Q6ZQN7 724 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 RNF44Q7L0R7 432 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 RAB11FIP2Q7L804 512 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 GOLGA7Q7Z5G4 137 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 TMPRSS11BQ86T26 416 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 DNAJC22Q8N4W6 341 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 TEX9Q8N6V9 391 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 OR4K1Q8NGD4 311 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 ZNF483Q8TF39 744 aaPredicted RBP18.92■□□□□ 0.62
UPF3A-211ENST00000618700 NSUN5Q96P11 429 aaKnown RBP18.92■□□□□ 0.62
UPF3A-211ENST00000618700 CAPS2Q9BXY5 557 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 PELI2Q9HAT8 420 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 KCNK9Q9NPC2 374 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 PLSCR2Q9NRY7 297 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 OXSMQ9NWU1 459 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 AKAP7Q9P0M2 348 aaPredicted RBP18.92■□□□□ 0.62
UPF3A-211ENST00000618700 SNX7Q9UNH6 387 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 HEATR5BQ9P2D3 2071 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 KIF26BQ2KJY2 2108 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 TMEM120BA0PK00 339 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 EFCAB7A8K855 629 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 H7BY64 318 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 HAT1O14929 419 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 PRAMEF4O60810 478 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 CTSVO60911 334 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 EBLN1P0CF75 366 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 DHRS4L1P0CG22 281 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 EPB42P16452 691 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 IMPDH1P20839 514 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 ARL4DP49703 201 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 RELAQ04206 551 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 GTF2H2Q13888 395 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 UNC50Q53HI1 259 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 PRAMEF9Q5VWM5 478 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 GTF2H2CQ6P1K8 395 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 NXPE4Q6UWF7 544 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 FAM129CQ86XR2 697 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 C10orf107Q8IVU9 208 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 WDR36Q8NI36 951 aaKnown RBP18.91■□□□□ 0.62
UPF3A-211ENST00000618700 WDR34Q96EX3 536 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 PRAP1Q96NZ9 151 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 EHD1Q9H4M9 534 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 ZBTB26Q9HCK0 441 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 OCIAD1Q9NX40 245 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 PILRAQ9UKJ1 303 aa18.91■□□□□ 0.62
UPF3A-211ENST00000618700 PMS2P1A4D2B8 440 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 B4E171 279 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 AGRPO00253 132 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 PLD2O14939 933 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 HCRTR1O43613 425 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 FGF3P11487 239 aaPredicted RBP18.9■□□□□ 0.62
UPF3A-211ENST00000618700 CCL4P13236 92 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 HGFP14210 728 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 EZRP15311 586 aaKnown RBP18.9■□□□□ 0.62
UPF3A-211ENST00000618700 ALDH3A1P30838 453 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 TSPAN7P41732 249 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 CASP2P42575 452 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 CCR8P51685 355 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 REEP5Q00765 189 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 TMTC4Q5T4D3 741 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 LIPMQ5VYY2 423 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 ATG9BQ674R7 924 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 ADCK2Q7Z695 626 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 MECRQ9BV79 373 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 SARGQ9BW04 601 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 KLK13Q9UKR3 277 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 ANGPTL3Q9Y5C1 460 aa18.9■□□□□ 0.62
UPF3A-211ENST00000618700 OR7A17O14581 309 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 CLGNO14967 610 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 KATNA1O75449 491 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 BPGMP07738 259 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 C1GALT1C1LP0DN25 315 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 CD22P20273 847 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 ETV5P41161 510 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 SERPINB4P48594 390 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 MC2RQ01718 297 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 ACY1Q03154 408 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 TUBB3Q13509 450 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 GPR19Q15760 415 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 TBCCQ15814 346 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 DEFB110Q30KQ9 67 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 C3orf38Q5JPI3 329 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 RPS27LQ71UM5 84 aaKnown RBP18.89■□□□□ 0.61
UPF3A-211ENST00000618700 PRR11Q96HE9 360 aaPredicted RBP18.89■□□□□ 0.61
UPF3A-211ENST00000618700 ZFYVE21Q9BQ24 234 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 SPNS1Q9H2V7 528 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 GSTO2Q9H4Y5 243 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 IPPKQ9H8X2 491 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 SYNPO2LQ9H987 977 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 FGF21Q9NSA1 209 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 SATB2Q9UPW6 733 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 PCDHGA8Q9Y5G5 932 aa18.89■□□□□ 0.61
UPF3A-211ENST00000618700 H3BMH7 237 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 WFS1O76024 890 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 ITIH1P19827 911 aa18.88■□□□□ 0.61
UPF3A-211ENST00000618700 VARSP26640 1264 aaKnown RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms