RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 NDUFA9Q16795 377 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 TICAM1Q8IUC6 712 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 SLC15A3Q8IY34 581 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 SIX5Q8N196 739 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 NPWQ8N729 165 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 TFGQ92734 400 aaPredicted RBP13.63□□□□□ -0.23
CPSF1-212ENST00000616140 RELTQ969Z4 430 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 SLC45A3Q96JT2 553 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 ZNF382Q96SR6 550 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 NLE1Q9NVX2 485 aaPredicted RBP13.63□□□□□ -0.23
CPSF1-212ENST00000616140 FAM120CQ9NX05 1096 aaKnown RBP13.63□□□□□ -0.23
CPSF1-212ENST00000616140 B4GALT6Q9UBX8 382 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 ALPPP05187 535 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 BDKRB1P46663 353 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 RORCP51449 518 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 C2orf27AQ580R0 203 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 ZNF773Q6PK81 442 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 TMIGD1Q6UXZ0 262 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 ADGRG6Q86SQ4 1221 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 OR4K1Q8NGD4 311 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 TSEN15Q8WW01 171 aaKnown RBP13.63□□□□□ -0.23
CPSF1-212ENST00000616140 CAMK1GQ96NX5 476 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 GAL3ST4Q96RP7 486 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 GAL3ST1Q99999 423 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 CD244Q9BZW8 370 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 TMEM9Q9P0T7 183 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 IGKV6-21A0A0C4DH24 114 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 PRAMEF12O95522 483 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 RPL10P27635 214 aaKnown RBP13.62□□□□□ -0.23
CPSF1-212ENST00000616140 ARSDP51689 593 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 TAS2R50P59544 299 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 TLR1Q15399 786 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 ASRGL1Q7L266 308 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 NPAS3Q8IXF0 933 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 ATP6V1C2Q8NEY4 427 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 TSPEARQ8WU66 669 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 PAAF1Q9BRP4 392 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 TLR4O00206 839 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 DFNA5O60443 496 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 ABCB7O75027 752 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 KRT33AO76009 404 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 EDNRBP24530 442 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 PIK3CBP42338 1070 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 PDCD4Q53EL6 469 aaKnown RBP13.62□□□□□ -0.23
CPSF1-212ENST00000616140 IDNKQ5T6J7 187 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 HDDC3Q8N4P3 179 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 TMEM145Q8NBT3 493 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 KLHL6Q8WZ60 621 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 C1orf74Q96LT6 269 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 WDR26Q9H7D7 661 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 DUXAA6NLW8 204 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 S1PR4O95977 384 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 CD1DP15813 335 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 IGFALSP35858 605 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 MAGEA11P43364 429 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 PREPP48147 710 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 SEC13P55735 322 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 CLDN10P78369 228 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 SLC13A2Q13183 592 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 UPP1Q16831 310 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 UNC50Q53HI1 259 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 ANKRD26P1Q6NSI1 321 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 TMEM126BQ8IUX1 230 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 NFKBIDQ8NI38 313 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 IGSF8Q969P0 613 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 CCM2Q9BSQ5 444 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 GPN1Q9HCN4 374 aaPredicted RBP13.62□□□□□ -0.23
CPSF1-212ENST00000616140 P2RX2Q9UBL9 471 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 XPNPEP2O43895 674 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 MAFKO60675 156 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 SOX14O95416 240 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 NPPAP01160 153 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 CBSLP0DN79 551 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 AKT2P31751 481 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 CBSP35520 551 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 ZNF829Q3KNS6 432 aaPredicted RBP13.62□□□□□ -0.23
CPSF1-212ENST00000616140 TPRG1LQ5T0D9 272 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 BTN2A1Q7KYR7 527 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 SCAMP4Q969E2 229 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 RNF31Q96EP0 1072 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 GPER1Q99527 375 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 ITPAQ9BY32 194 aa13.62□□□□□ -0.23
CPSF1-212ENST00000616140 LRRC37A3O60309 1634 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.61□□□□□ -0.23
CPSF1-212ENST00000616140 AXIN1O15169 862 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 MAGEB3O15480 346 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 CLPXO76031 633 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 STATHP02808 62 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 ATP4BP51164 291 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 STEAP4Q687X5 459 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 OR10T2Q8NGX3 314 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 RHEBL1Q8TAI7 183 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 RGMAQ96B86 450 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 KCTD7Q96MP8 289 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 CCM2LQ9NUG4 571 aaPredicted RBP13.61□□□□□ -0.23
CPSF1-212ENST00000616140 WNT6Q9Y6F9 365 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 BRWD1Q9NSI6 2320 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 PRAMEF33A0A0G2JMD5 474 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 PRAMEF10O60809 474 aa13.61□□□□□ -0.23
CPSF1-212ENST00000616140 GJB5O95377 273 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms