RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 TRIM31Q9BZY9 425 aa14.36□□□□□ -0.11
LIG1-215ENST00000597901 SEMA3GQ9NS98 782 aa14.36□□□□□ -0.11
LIG1-215ENST00000597901 CUEDC1Q9NWM3 386 aaPredicted RBP14.36□□□□□ -0.11
LIG1-215ENST00000597901 ZNF282Q9UDV7 671 aaPredicted RBP14.36□□□□□ -0.11
LIG1-215ENST00000597901 RUVBL1Q9Y265 456 aaKnown RBP14.36□□□□□ -0.11
LIG1-215ENST00000597901 SNX24Q9Y343 169 aa14.36□□□□□ -0.11
LIG1-215ENST00000597901 MAP4K5Q9Y4K4 846 aa14.36□□□□□ -0.11
LIG1-215ENST00000597901 HS3ST3B1Q9Y662 390 aa14.36□□□□□ -0.11
LIG1-215ENST00000597901 PCSK5Q92824 1860 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 EFCAB8A8MWE9 144 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 TXNDC9O14530 226 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 HAT1O14929 419 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 SORBS2O94875 1100 aaKnown RBP14.35□□□□□ -0.11
LIG1-215ENST00000597901 HIST1H2AGP0C0S8 130 aaPredicted RBP14.35□□□□□ -0.11
LIG1-215ENST00000597901 EZRP15311 586 aaKnown RBP14.35□□□□□ -0.11
LIG1-215ENST00000597901 HIST1H2ADP20671 130 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 HRH2P25021 359 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 PGGT1BP53609 377 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 IL2P60568 153 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 KLC1Q07866 573 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 AIMP2Q13155 320 aaKnown RBP14.35□□□□□ -0.11
LIG1-215ENST00000597901 UBAP2LQ14157 1087 aaKnown RBP14.35□□□□□ -0.11
LIG1-215ENST00000597901 FRG1Q14331 258 aaKnown RBP14.35□□□□□ -0.11
LIG1-215ENST00000597901 PLEKHN1Q494U1 663 aaPredicted RBP14.35□□□□□ -0.11
LIG1-215ENST00000597901 VWA2Q5GFL6 755 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 HECTD2Q5U5R9 776 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 GARNL3Q5VVW2 1013 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 AGTRAPQ6RW13 159 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 IGFL3Q6UXB1 125 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 LAPTM4BQ86VI4 370 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 ARHGEF39Q8N4T4 335 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 EFCAB3Q8N7B9 438 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 GPATCH11Q8N954 259 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 Q8NA96 180 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 CPT1CQ8TCG5 803 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 LINGO1Q96FE5 620 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 HIST1H2AHQ96KK5 128 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 HIST1H2AJQ99878 128 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 H2AFJQ9BTM1 129 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 YIPF2Q9BWQ6 316 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 PCBD2Q9H0N5 130 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 ATG10Q9H0Y0 220 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 SLAMF7Q9NQ25 335 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 CCDC177Q9NQR7 707 aaPredicted RBP14.35□□□□□ -0.11
LIG1-215ENST00000597901 FBXL4Q9UKA2 621 aa14.35□□□□□ -0.11
LIG1-215ENST00000597901 IGLV3-12A0A075B6K2 115 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 KCNE1BA0A087WTH5 132 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 FOXS1O43638 330 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 TSPAN12O95859 305 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 ALPPP05187 535 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 NPPBP16860 134 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 FBLP22087 321 aaKnown RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 ITGA3P26006 1051 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 SLC26A3P40879 764 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 RPL21P46778 160 aaKnown RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 MRPS25P82663 173 aaKnown RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 PDIA2Q13087 525 aaKnown RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 CBLBQ13191 982 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 SP140Q13342 867 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 PDAP1Q13442 181 aaKnown RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 NAE1Q13564 534 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 INPP5JQ15735 1006 aaPredicted RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 RBBP7Q16576 425 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 PHKG1Q16816 387 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 ZXDCQ2QGD7 858 aaPredicted RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 PRAMEF13Q5VWM6 474 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 ATG9BQ674R7 924 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 SLC6A19Q695T7 634 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 MBOAT1Q6ZNC8 495 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 PARP9Q8IXQ6 854 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 PRSS58Q8IYP2 241 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 OR11G2Q8NGC1 345 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 PNPLA2Q96AD5 504 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 ALKBH8Q96BT7 664 aaKnown RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 MVB12AQ96EY5 273 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 MMABQ96EY8 250 aaPredicted RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 PDLIM5Q96HC4 596 aaKnown RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 VPS50Q96JG6 964 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 CRB3Q9BUF7 120 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 ZBTB20Q9HC78 741 aaPredicted RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 MOCS1Q9NZB8 636 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 LUZP4Q9P127 313 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 TRPC4Q9UBN4 977 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 C3orf18Q9UK00 162 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 CORO1CQ9ULV4 474 aaPredicted RBP14.34□□□□□ -0.11
LIG1-215ENST00000597901 MED13Q9UHV7 2174 aa14.34□□□□□ -0.11
LIG1-215ENST00000597901 A0A0A6YYC8 382 aaPredicted RBP14.33□□□□□ -0.12
LIG1-215ENST00000597901 E7ESA3 106 aa14.33□□□□□ -0.12
LIG1-215ENST00000597901 I3L1I5 382 aaPredicted RBP14.33□□□□□ -0.12
LIG1-215ENST00000597901 P2RX6O15547 441 aa14.33□□□□□ -0.12
LIG1-215ENST00000597901 ALOX12BO75342 701 aa14.33□□□□□ -0.12
LIG1-215ENST00000597901 VPS4BO75351 444 aa14.33□□□□□ -0.12
LIG1-215ENST00000597901 IPO13O94829 963 aaKnown RBP14.33□□□□□ -0.12
LIG1-215ENST00000597901 FDXRP22570 491 aa14.33□□□□□ -0.12
LIG1-215ENST00000597901 EMP2P54851 167 aa14.33□□□□□ -0.12
LIG1-215ENST00000597901 TBPL1P62380 186 aa14.33□□□□□ -0.12
LIG1-215ENST00000597901 CSNK1G2P78368 415 aa14.33□□□□□ -0.12
LIG1-215ENST00000597901 MGAT5Q09328 741 aa14.33□□□□□ -0.12
LIG1-215ENST00000597901 DSG2Q14126 1118 aa14.33□□□□□ -0.12
LIG1-215ENST00000597901 FAM53BQ14153 422 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms