RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 IRF8Q02556 426 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 PRKCZQ05513 592 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 ZNF648Q5T619 568 aaPredicted RBP14.81□□□□□ -0.04
UPF1-204ENST00000596842 CXorf57Q6NSI4 855 aaKnown RBP14.81□□□□□ -0.04
UPF1-204ENST00000596842 CYP2U1Q7Z449 544 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 SOCS4Q8WXH5 440 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 RDH12Q96NR8 316 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 CPPED1Q9BRF8 314 aaPredicted RBP14.81□□□□□ -0.04
UPF1-204ENST00000596842 TRIT1Q9H3H1 467 aaKnown RBP14.81□□□□□ -0.04
UPF1-204ENST00000596842 RRAGCQ9HB90 399 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 OR2AG2A6NM03 316 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 JRKO75564 520 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 VNN2O95498 520 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 F11P03951 625 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 CRATP43155 626 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 STK19P49842 368 aaPredicted RBP14.81□□□□□ -0.04
UPF1-204ENST00000596842 ABRQ12979 859 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 ARL14EPQ8N8R7 260 aaPredicted RBP14.81□□□□□ -0.04
UPF1-204ENST00000596842 CCDC115Q96NT0 180 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 TAS2R16Q9NYV7 291 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 MBD1Q9UIS9 605 aaPredicted RBP14.81□□□□□ -0.04
UPF1-204ENST00000596842 RIMKLBQ9ULI2 386 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 FAM47E-STBD1D6RA91 191 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 SYN3O14994 580 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 RGS5O15539 181 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 CD160O95971 181 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 EBLN1P0CF75 366 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 PBLDP30039 288 aaPredicted RBP14.8□□□□□ -0.04
UPF1-204ENST00000596842 RRM2P31350 389 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 PPP3CCP48454 512 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 GABARAPL2P60520 117 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 RFX4Q33E94 735 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 UAP1L1Q3KQV9 507 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 ADNP2Q6IQ32 1131 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 CERS6Q6ZMG9 384 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 SNX20Q7Z614 316 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 AKAP14Q86UN6 197 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 S100ZQ8WXG8 99 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 TTPALQ9BTX7 342 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 SIRT5Q9NXA8 310 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 SAP18O00422 153 aaKnown RBP14.8□□□□□ -0.04
UPF1-204ENST00000596842 TXNDC8Q6A555 127 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 SERPINA13PQ6UXR4 307 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 PJA1Q8NG27 643 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 MROQ9BYG7 248 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 KCNH6Q9H252 994 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 ACOT13Q9NPJ3 140 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 THG1LQ9NWX6 298 aaKnown RBP14.8□□□□□ -0.04
UPF1-204ENST00000596842 OGDHLQ9ULD0 1010 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 SNX6Q9UNH7 406 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 MAGEB17A8MXT2 336 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 PRRG1O14668 218 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 SEPT4O43236 478 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 PCDHGA12O60330 932 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 CHRM5P08912 532 aaPredicted RBP14.8□□□□□ -0.04
UPF1-204ENST00000596842 ABHD18Q0P651 414 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 ILF2Q12905 390 aaKnown RBP14.8□□□□□ -0.04
UPF1-204ENST00000596842 XKR6Q5GH73 641 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 RGMBQ6NW40 437 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 FAM83FQ8NEG4 500 aaPredicted RBP14.8□□□□□ -0.04
UPF1-204ENST00000596842 AUTS2Q8WXX7 1259 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 NELL1Q92832 810 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 PRRG3Q9BZD7 231 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 DSN1Q9H410 356 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 AKIP1Q9NQ31 210 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 LHX3Q9UBR4 397 aa14.8□□□□□ -0.04
UPF1-204ENST00000596842 GABARAPO95166 117 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 RETP07949 1114 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 GADD45AP24522 165 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 KDELR2P33947 212 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 LIPAP38571 399 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 SLC35A2P78381 396 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 ATG9BQ674R7 924 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 SHQ1Q6PI26 577 aaKnown RBP14.79□□□□□ -0.04
UPF1-204ENST00000596842 PLEKHG7Q6ZR37 379 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 RFPL4BQ6ZWI9 263 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 VRK3Q8IV63 474 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 STX19Q8N4C7 294 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 GPR26Q8NDV2 337 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 DNASE1L2Q92874 299 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 PMEPA1Q969W9 287 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 GTPBP3Q969Y2 492 aaKnown RBP14.79□□□□□ -0.04
UPF1-204ENST00000596842 CNDP2Q96KP4 475 aaKnown RBP14.79□□□□□ -0.04
UPF1-204ENST00000596842 SERHLQ9NQF3 203 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 CCNKO75909 580 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 CCNDBP1O95273 360 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 CYBAP13498 195 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 DNAJA1P31689 397 aaKnown RBP14.79□□□□□ -0.04
UPF1-204ENST00000596842 CCL23P55773 120 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 CAMK2GQ13555 558 aaPredicted RBP14.79□□□□□ -0.04
UPF1-204ENST00000596842 GBX1Q14549 363 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 HKDC1Q2TB90 917 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 ATP13A5Q4VNC0 1218 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 PRSS36Q5K4E3 855 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 ELMOD2Q8IZ81 293 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 SVOPQ8N4V2 548 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 Q96MT0 163 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 COPS8Q99627 209 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.79□□□□□ -0.04
UPF1-204ENST00000596842 SLC32A1Q9H598 525 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms