RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SMYD2Q9NRG4 433 aa14.43□□□□□ -0.1
TRIM28-205ENST00000595028 UTP6Q9NYH9 597 aaKnown RBP14.43□□□□□ -0.1
TRIM28-205ENST00000595028 TLK1Q9UKI8 766 aa14.43□□□□□ -0.1
TRIM28-205ENST00000595028 TP53TG5Q9Y2B4 290 aa14.43□□□□□ -0.1
TRIM28-205ENST00000595028 CENPEQ02224 2701 aa14.43□□□□□ -0.1
TRIM28-205ENST00000595028 HYKKA2RU49 373 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 MED26O95402 600 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 EIF2S1P05198 315 aaKnown RBP14.42□□□□□ -0.1
TRIM28-205ENST00000595028 SSTR1P30872 391 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 OTX2P32243 289 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 PLTPP55058 493 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 AP1S2P56377 157 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 FOXL2P58012 376 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 RELAQ04206 551 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 ATP1A4Q13733 1029 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 PRTGQ2VWP7 1150 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 FAM214AQ32MH5 1076 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 TCTN3Q6NUS6 607 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 C8orf74Q6P047 294 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 FBXO42Q6P3S6 717 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 ZDHHC24Q6UX98 284 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 COX15Q7KZN9 410 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 ADCK2Q7Z695 626 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 DTWD1Q8N5C7 304 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 METTL27Q8N6F8 245 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-205ENST00000595028 CSNK1A1LQ8N752 337 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 FBXO25Q8TCJ0 367 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 VPS39Q96JC1 886 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 C10orf90Q96M02 699 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 PCBD2Q9H0N5 130 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 ING2Q9H160 280 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 WDR54Q9H977 334 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 ACSS2Q9NR19 701 aa14.42□□□□□ -0.1
TRIM28-205ENST00000595028 TNRC6AQ8NDV7 1962 aaKnown RBP14.42□□□□□ -0.1
TRIM28-205ENST00000595028 SPENQ96T58 3664 aaKnown RBP14.41□□□□□ -0.1
TRIM28-205ENST00000595028 TCRBV9S1A1TA0A576 114 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 PABPN1LA6NDY0 278 aaKnown RBP14.41□□□□□ -0.1
TRIM28-205ENST00000595028 HAT1O14929 419 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 PIAS1O75925 651 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 ALBP02768 609 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 UMODP07911 640 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 ENO2P09104 434 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-205ENST00000595028 HIST1H2AGP0C0S8 130 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-205ENST00000595028 PIM1P11309 404 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-205ENST00000595028 NR1D1P20393 614 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 HIST1H2ADP20671 130 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 SAT1P21673 171 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 CCND1P24385 295 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 EMP3P54852 163 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 TAS2R39P59534 338 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 ILF2Q12905 390 aaKnown RBP14.41□□□□□ -0.1
TRIM28-205ENST00000595028 ZNF460Q14592 562 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 TRADDQ15628 312 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 WHAMMP3Q1A5X7 153 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 MUM1Q2TAK8 710 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 SBSNQ6UWP8 590 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 TMEM207Q6UWW9 146 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 PTRH1Q86Y79 214 aaKnown RBP14.41□□□□□ -0.1
TRIM28-205ENST00000595028 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-205ENST00000595028 CDKL2Q92772 493 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 PDLIM5Q96HC4 596 aaKnown RBP14.41□□□□□ -0.1
TRIM28-205ENST00000595028 CABS1Q96KC9 395 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 HIST1H2AHQ96KK5 128 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 IP6K3Q96PC2 410 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 OR2A5Q96R48 311 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 SPSB2Q99619 263 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 HIST1H2AJQ99878 128 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 H2AFJQ9BTM1 129 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 SGPP1Q9BX95 441 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 ATG10Q9H0Y0 220 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 SLC26A1Q9H2B4 701 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 ARL15Q9NXU5 204 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 CTSFQ9UBX1 484 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 IKZF3Q9UKT9 509 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 SH2B3Q9UQQ2 575 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 RUVBL1Q9Y265 456 aaKnown RBP14.41□□□□□ -0.1
TRIM28-205ENST00000595028 PCDHGA9Q9Y5G4 932 aaKnown RBP14.41□□□□□ -0.1
TRIM28-205ENST00000595028 ICE1Q9Y2F5 2266 aa14.41□□□□□ -0.1
TRIM28-205ENST00000595028 FAM159BA6NKW6 160 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 ENO4A6NNW6 628 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 H7BY64 318 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 K7EM74 188 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 P2RX6O15547 441 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 URI1O94763 535 aaPredicted RBP14.4□□□□□ -0.1
TRIM28-205ENST00000595028 C1QAP02745 245 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 GSTA2P09210 222 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 HRH2P25021 359 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 OR1D4P47884 311 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 RRADP55042 308 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 NAE1Q13564 534 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 SSPNQ14714 243 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 IGFBP7Q16270 282 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 NKG7Q16617 165 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 PPP1R3AQ16821 1122 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 HKDC1Q2TB90 917 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 HIST2H2BCQ6DN03 193 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 PRMT9Q6P2P2 845 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 LCTLQ6UWM7 567 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 OVCH1Q7RTY7 1134 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 PPP1R32Q7Z5V6 425 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms