RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 MLXIPLQ9NP71 852 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 SEMA3GQ9NS98 782 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 TMEM184CQ9NVA4 438 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 STOX2Q9P2F5 926 aaPredicted RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 ZNF282Q9UDV7 671 aaPredicted RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 FLNBO75369 2602 aaKnown RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 IGKV1-8A0A0C4DH67 115 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 H7BY64 318 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 AGPSO00116 658 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 NRP2O60462 931 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 PDGFAP04085 211 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 UMODP07911 640 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 GRK3P35626 688 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 AP1S2P56377 157 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 RPS15AP62244 130 aaKnown RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 TBPL1P62380 186 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 ETF1P62495 437 aaKnown RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 NAE1Q13564 534 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 COLEC12Q5KU26 742 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 VWA5B1Q5TIE3 1220 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 IRAK1BP1Q5VVH5 260 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 CAPN13Q6MZZ7 669 aaPredicted RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 TRMT10BQ6PF06 316 aaKnown RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 AGTRAPQ6RW13 159 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 COX15Q7KZN9 410 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 PPP1R32Q7Z5V6 425 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 ATCAYQ86WG3 371 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 LRRC56Q8IYG6 542 aaPredicted RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 ZBED8Q8IZ13 594 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 EFCAB3Q8N7B9 438 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 SPATA4Q8NEY3 305 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 PYROXD1Q8WU10 500 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 ATL1Q8WXF7 558 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 VPS39Q96JC1 886 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 C16orf45Q96MC5 204 aaPredicted RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 PRAP1Q96NZ9 151 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 OR2A5Q96R48 311 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 ERP44Q9BS26 406 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 CRB3Q9BUF7 120 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 NUDT9Q9BW91 350 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 SOX17Q9H6I2 414 aaPredicted RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 ARL15Q9NXU5 204 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 WHRNQ9P202 907 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 C5AR2Q9P296 337 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 SLC17A6Q9P2U8 582 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 CTSFQ9UBX1 484 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 ADAMTS6Q9UKP5 1117 aa11.81□□□□□ -0.52
SS18-225ENST00000585121 RUVBL1Q9Y265 456 aaKnown RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 UTP11Q9Y3A2 253 aaKnown RBP11.81□□□□□ -0.52
SS18-225ENST00000585121 TENM4Q6N022 2769 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 TTLL8A6PVC2 850 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 E7ESA3 106 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 HAT1O14929 419 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 IPO13O94829 963 aaKnown RBP11.8□□□□□ -0.52
SS18-225ENST00000585121 ENO2P09104 434 aaPredicted RBP11.8□□□□□ -0.52
SS18-225ENST00000585121 SAT1P21673 171 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 FDXRP22570 491 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 AVPR1BP47901 424 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 FOXK1P85037 733 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 AIMP2Q13155 320 aaKnown RBP11.8□□□□□ -0.52
SS18-225ENST00000585121 RAPSNQ13702 412 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 MYBPC3Q14896 1274 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 STRA8Q7Z7C7 330 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 SLC26A11Q86WA9 606 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 SPNS2Q8IVW8 549 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 NKAPQ8N5F7 415 aaKnown RBP11.8□□□□□ -0.52
SS18-225ENST00000585121 TM9SF4Q92544 642 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 CDKL2Q92772 493 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 THAP11Q96EK4 314 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 C10orf90Q96M02 699 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 SPSB2Q99619 263 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 SMAD5Q99717 465 aaKnown RBP11.8□□□□□ -0.52
SS18-225ENST00000585121 HAUS8Q9BT25 410 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 ATG10Q9H0Y0 220 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 DPH5Q9H2P9 285 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 PLAC1Q9HBJ0 212 aa11.8□□□□□ -0.52
SS18-225ENST00000585121 CUEDC1Q9NWM3 386 aaPredicted RBP11.8□□□□□ -0.52
SS18-225ENST00000585121 NBASA2RRP1 2371 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 VSTM2BA6NLU5 285 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 EIF3HO15372 352 aaKnown RBP eCLIP11.79□□□□□ -0.52
SS18-225ENST00000585121 ZGLP1P0C6A0 271 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 ITGA3P26006 1051 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 SLC12A2P55011 1212 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 FOXL2P58012 376 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 DSG2Q14126 1118 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 IGFBP7Q16270 282 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 HKDC1Q2TB90 917 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 TUBB8Q3ZCM7 444 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 DUPD1Q68J44 220 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 LCTLQ6UWM7 567 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 SYT10Q6XYQ8 523 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 MBOAT1Q6ZNC8 495 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 SHISA6Q6ZSJ9 500 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 PLD3Q8IV08 490 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 PRSS58Q8IYP2 241 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 TBC1D19Q8N5T2 526 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 STT3BQ8TCJ2 826 aa11.79□□□□□ -0.52
SS18-225ENST00000585121 MMABQ96EY8 250 aaPredicted RBP11.79□□□□□ -0.52
SS18-225ENST00000585121 PDLIM5Q96HC4 596 aaKnown RBP11.79□□□□□ -0.52
SS18-225ENST00000585121 WDR83Q9BRX9 315 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms