RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 E2F6O75461 281 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 C1QCP02747 245 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 CATP04040 527 aaKnown RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 ELFN1P0C7U0 828 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 HSD3B1P14060 373 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 ENGP17813 658 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 GPX2P18283 190 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 CRHBPP24387 322 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 HSD3B2P26439 372 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 WEE1P30291 646 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 POLR2IP36954 125 aaKnown RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 PIGAP37287 484 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 NTHL1P78549 312 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 TMEM115Q12893 351 aaPredicted RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 PPP1R8Q12972 351 aaKnown RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 POM121L1PQ3SYA9 428 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 PRSS36Q5K4E3 855 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 RBM48Q5RL73 367 aaKnown RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 C10orf62Q5T681 223 aaPredicted RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 ANKRD34AQ69YU3 496 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 JAZF1Q86VZ6 243 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 HIPK1Q86Z02 1210 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 NRSN1Q8IZ57 195 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 OR56A3Q8NH54 315 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 HDAC2Q92769 488 aaKnown RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 TBC1D20Q96BZ9 403 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 AP2M1Q96CW1 435 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 CNDP2Q96KP4 475 aaKnown RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 BRF2Q9HAW0 419 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 LTB4R2Q9NPC1 389 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 FAM120CQ9NX05 1096 aaKnown RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 CDH7Q9ULB5 785 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 ERVK-11Q9UQG0 969 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 KCNK5O95279 499 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 SLC16A8O95907 504 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 SRPRAP08240 638 aaKnown RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 COX7A2P14406 83 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 JUNBP17275 347 aaPredicted RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 PRKACGP22612 351 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 IMPA1P29218 277 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 HOXA9P31269 272 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 MAPK9P45984 424 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 BDKRB1P46663 353 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 NUP107P57740 925 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 ACSM2AQ08AH3 577 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 KCNAB2Q13303 367 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 DDX39BQ13838 428 aaKnown RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 SPIDRQ14159 915 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 GRIN2CQ14957 1233 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 ACOX1Q15067 660 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 VMACQ2NL98 169 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 BROXQ5VW32 411 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 ACSM2BQ68CK6 577 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 DHRS4L2Q6PKH6 230 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 PARS2Q7L3T8 475 aaKnown RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 GPR155Q7Z3F1 870 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 GAB3Q8WWW8 586 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 MED8Q96G25 268 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 PKP4Q99569 1192 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 SGK2Q9HBY8 427 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 TMEFF2Q9UIK5 374 aaPredicted RBP9.75□□□□□ -0.85
VPS53-220ENST00000576149 C3orf18Q9UK00 162 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 MKI67P46013 3256 aaKnown RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 LOC100130705A0A1B0GUX0 176 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 MAGEB17A8MXT2 336 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 H3BMQ9 156 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 SLC9A3R1O14745 358 aaPredicted RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 YY2O15391 372 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 HS6ST1O60243 411 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 TPPPO94811 219 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 EPN2O95208 641 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 CISD3P0C7P0 127 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 EEF1B2P24534 225 aaKnown RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 GRSF1Q12849 480 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS53-220ENST00000576149 DHCR24Q15392 516 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 SF1Q15637 639 aaKnown RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 NEDD8Q15843 81 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 C6orf141Q5SZD1 244 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 GPR107Q5VW38 600 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 CPZQ66K79 652 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ERAP2Q6P179 960 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 TMEM220Q6QAJ8 160 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ZNF621Q6ZSS3 439 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 R3HCC1LQ7Z5L2 792 aaKnown RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 NLRP8Q86W28 1048 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 DCP2Q8IU60 420 aaKnown RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 ZDHHC21Q8IVQ6 265 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ZZZ3Q8IYH5 903 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ZNF366Q8N895 744 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 TERB1Q8NA31 727 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 CHDHQ8NE62 594 aaPredicted RBP9.74□□□□□ -0.85
VPS53-220ENST00000576149 OR10Q1Q8NGQ4 319 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 POF1BQ8WVV4 589 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 STARD8Q92502 1023 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 COG8Q96MW5 612 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ADNPQ9H2P0 1102 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 CIDEBQ9UHD4 219 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 ITM2BQ9Y287 266 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 BTBD3Q9Y2F9 522 aa9.74□□□□□ -0.85
VPS53-220ENST00000576149 HEMK1Q9Y5R4 338 aaPredicted RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms