RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CFAP73A6NFT4 308 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 PTGESO14684 152 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 MEIS2O14770 477 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 AP5Z1O43299 807 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 FCGR3BO75015 233 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 FRAT2O75474 233 aaPredicted RBP5.56□□□□□ -1.52
VPS53-219ENST00000576019 NEURL1O76050 574 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 GLCEO94923 617 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 EPN2O95208 641 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 AK1P00568 194 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 MMP3P08254 477 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 UBA1P22314 1058 aaKnown RBP5.56□□□□□ -1.52
VPS53-219ENST00000576019 CNR2P34972 360 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 CDKN1AP38936 164 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 MDH1P40925 334 aaKnown RBP5.56□□□□□ -1.52
VPS53-219ENST00000576019 ASMTP46597 345 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 GPR12P47775 334 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 TNK1Q13470 666 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 RAPSNQ13702 412 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 UGP2Q16851 508 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 CCDC40Q4G0X9 1142 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 FASTKD1Q53R41 847 aaKnown RBP5.56□□□□□ -1.52
VPS53-219ENST00000576019 TTC39AQ5SRH9 613 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 SPOUT1Q5T280 376 aaKnown RBP5.56□□□□□ -1.52
VPS53-219ENST00000576019 NT5DC1Q5TFE4 455 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 ALS2CLQ60I27 953 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 ENPP7Q6UWV6 458 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 WDR88Q6ZMY6 472 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 PRSS42Q7Z5A4 293 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 SERPINA11Q86U17 422 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 SIAH3Q8IW03 269 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 DENND6AQ8IWF6 608 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 AQP12AQ8IXF9 295 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 C4orf19Q8IY42 314 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 OTUD6BQ8N6M0 293 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 OR1J2Q8NGS2 313 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 B4GALNT2Q8NHY0 566 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 ASB10Q8WXI3 467 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 THRSPQ92748 146 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 KAT2BQ92831 832 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 TMEM186Q96B77 213 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 SNRNP40Q96DI7 357 aaKnown RBP5.56□□□□□ -1.52
VPS53-219ENST00000576019 NSMCE2Q96MF7 247 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 FCRL5Q96RD9 977 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 SEPHS2Q99611 448 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 AIFM2Q9BRQ8 373 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 TCHPQ9BT92 498 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 CARD6Q9BX69 1037 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 ACPTQ9BZG2 426 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 CCSER1Q9C0I3 900 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 LSG1Q9H089 658 aaKnown RBP5.56□□□□□ -1.52
VPS53-219ENST00000576019 RAD21L1Q9H4I0 556 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 RAB9BQ9NP90 201 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 CD93Q9NPY3 652 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 HINT3Q9NQE9 182 aaKnown RBP5.56□□□□□ -1.52
VPS53-219ENST00000576019 FAM53CQ9NYF3 392 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 TBC1D7Q9P0N9 293 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 SLC9A2Q9UBY0 812 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 STK39Q9UEW8 545 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 ITM2BQ9Y287 266 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 SNX9Q9Y5X1 595 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 MUC22E2RYF6 1773 aaPredicted RBP5.56□□□□□ -1.52
VPS53-219ENST00000576019 KIAA1671Q9BY89 1806 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 ADGRA3Q8IWK6 1321 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 BSNQ9UPA5 3926 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 TRBV2A0A0J9YWF9 115 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 CTAGE9A4FU28 777 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 ARHGAP42A6NI28 874 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 FOXO6A8MYZ6 492 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 MPPED1O15442 326 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 KIF1CO43896 1103 aaKnown RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 HSF2BPO75031 334 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 TSC22D2O75157 780 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 PRAMEF12O95522 483 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 TTLL1O95922 423 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 RAB40ALP0C0E4 278 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 PLA2G4BP0C869 781 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 SFTPCP11686 197 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 KRT5P13647 590 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 CD22P20273 847 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 ACO1P21399 889 aaKnown RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 RDXP35241 583 aaKnown RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 GBX2P52951 348 aaPredicted RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 TMPRSS3P57727 454 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 SRP54P61011 504 aaKnown RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 POLR2LP62875 67 aaKnown RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 SLC25A3Q00325 362 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 GUCY1B3Q02153 619 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 PKP1Q13835 747 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 DPYSQ14117 519 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 MEP1AQ16819 746 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 RABL6Q3YEC7 729 aaPredicted RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 TCTE1Q5JU00 501 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 TEX35Q5T0J7 233 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 NSUN5P2Q63ZY6 315 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 SIGIRRQ6IA17 410 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 AFTPHQ6ULP2 937 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 FAM198BQ6UWH4 519 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 MACC1Q6ZN28 852 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 ADAMTSL2Q86TH1 951 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms