RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZNF449Q6P9G9 518 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 CNTD1Q8N815 330 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 HSPH1Q92598 858 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 ISL2Q96A47 359 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 ZUFSPQ96AP4 578 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 SLC22A18Q96BI1 424 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 TADA1Q96BN2 335 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 REG4Q9BYZ8 158 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 NDST4Q9H3R1 872 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 ZNF701Q9NV72 531 aaPredicted RBP15.15■□□□□ 0.02
VPS53-218ENST00000575207 ASF1AQ9Y294 204 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 FAM169AQ9Y6X4 670 aa15.15■□□□□ 0.02
VPS53-218ENST00000575207 ROS1P08922 2347 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 LOC105369274A0A096LPK9 316 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 LOC102723532A0A0G2JNH3 316 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 AQP7O14520 342 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 NDST3O95803 873 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 PPIAP62937 165 aaKnown RBP15.14■□□□□ 0.01
VPS53-218ENST00000575207 MAMLD1Q13495 774 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 WIPI1Q5MNZ9 446 aaPredicted RBP15.14■□□□□ 0.01
VPS53-218ENST00000575207 CCDC70Q6NSX1 233 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 RGS9BPQ6ZS82 235 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 OR4N4Q8N0Y3 316 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 LIX1Q8N485 282 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 OR5K2Q8NHB8 316 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 ZMYND19Q96E35 227 aaPredicted RBP15.14■□□□□ 0.01
VPS53-218ENST00000575207 IMP4Q96G21 291 aaKnown RBP15.14■□□□□ 0.01
VPS53-218ENST00000575207 BEX2Q9BXY8 128 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 RTN4Q9NQC3 1192 aaKnown RBP15.14■□□□□ 0.01
VPS53-218ENST00000575207 TMEM160Q9NX00 188 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.14■□□□□ 0.01
VPS53-218ENST00000575207 ACAD8Q9UKU7 415 aa15.14■□□□□ 0.01
VPS53-218ENST00000575207 TDRKHQ9Y2W6 561 aaKnown RBP15.14■□□□□ 0.01
VPS53-218ENST00000575207 IL1R2P27930 398 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 ACADLP28330 430 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 CEACAM8P31997 349 aaPredicted RBP15.13■□□□□ 0.01
VPS53-218ENST00000575207 CYLC1P35663 651 aaPredicted RBP15.13■□□□□ 0.01
VPS53-218ENST00000575207 SOX5P35711 763 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 GPR85P60893 370 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 TRIM14Q14142 442 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 SYT16Q17RD7 645 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 CCDC122Q5T0U0 273 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 TRILQ7L0X0 811 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 MAATS1Q7Z4T9 603 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 ANKRD37Q7Z713 158 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 MEX3DQ86XN8 651 aaKnown RBP15.13■□□□□ 0.01
VPS53-218ENST00000575207 MCOLN2Q8IZK6 566 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 LINC01555Q8NAE3 123 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 ELP5Q8TE02 316 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 LRRN4Q8WUT4 740 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 KIAA1191Q96A73 305 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 MMABQ96EY8 250 aaPredicted RBP15.13■□□□□ 0.01
VPS53-218ENST00000575207 ASB8Q9H765 288 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 PARVAQ9NVD7 372 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 PLAGL1Q9UM63 463 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 LIPGQ9Y5X9 500 aa15.13■□□□□ 0.01
VPS53-218ENST00000575207 SH3D21A4FU49 640 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 AP2A1O95782 977 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 S1PR4O95977 384 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 EIF2S1P05198 315 aaKnown RBP15.12■□□□□ 0.01
VPS53-218ENST00000575207 PGRP06401 933 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 RALBP11234 206 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 PKLRP30613 574 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 AGTR2P50052 363 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 MLF1P58340 268 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 SLC14A2Q15849 920 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 BOLA3Q53S33 107 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 WLSQ5T9L3 541 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 C12orf54Q6X4T0 127 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 SARAFQ96BY9 339 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 ZBED6CLQ96FA7 236 aaPredicted RBP15.12■□□□□ 0.01
VPS53-218ENST00000575207 DCUN1D1Q96GG9 259 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 LCORQ96JN0 433 aaPredicted RBP15.12■□□□□ 0.01
VPS53-218ENST00000575207 CABS1Q96KC9 395 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 CNPPD1Q9BV87 410 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 UBTD1Q9HAC8 227 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 PCDH18Q9HCL0 1135 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 LPAR3Q9UBY5 353 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 KLK4Q9Y5K2 254 aa15.12■□□□□ 0.01
VPS53-218ENST00000575207 SOWAHDA6NJG2 315 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 AGAP14A8MT82 685 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 ACOT7O00154 380 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 BIN1O00499 593 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 CASKO14936 926 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 FOXS1O43638 330 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 KDM1AO60341 852 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 FKBP9O95302 570 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 ANXA5P08758 320 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 ATP1B2P14415 290 aaPredicted RBP15.11■□□□□ 0.01
VPS53-218ENST00000575207 DEFA6Q01524 100 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 PAFAH1B3Q15102 231 aaKnown RBP15.11■□□□□ 0.01
VPS53-218ENST00000575207 PAPD4Q6PIY7 484 aaKnown RBP15.11■□□□□ 0.01
VPS53-218ENST00000575207 SPTLC3Q9NUV7 552 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 ALKBH4Q9NXW9 302 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 JKAMPQ9P055 326 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 PCDHGB3Q9Y5G1 929 aa15.11■□□□□ 0.01
VPS53-218ENST00000575207 RAI1Q7Z5J4 1906 aaPredicted RBP15.11■□□□□ 0.01
VPS53-218ENST00000575207 A0A0J9YVX5 310 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 TMEM191CA6NGB0 347 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 FAM166BA8MTA8 275 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms