RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-225	ENST00000569245	OR9A1P	Q8NGU1	263 aa		13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	GIMAP7	Q8NHV1	300 aa		13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	MIPEP	Q99797	713 aa		13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	FAM117A	Q9C073	453 aa		13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	VPS11	Q9H270	941 aa		13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	GPAM	Q9HCL2	828 aa		13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	TXLNG	Q9NUQ3	528 aa		13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	GEMIN8	Q9NWZ8	242 aa	Known RBP	13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	SPATA7	Q9P0W8	599 aa		13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	DCDC2	Q9UHG0	476 aa		13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	TRMT6	Q9UJA5	497 aa	Known RBP	13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	POLH	Q9Y253	713 aa		13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245	DHRS7	Q9Y394	339 aa		13.9	□□□□□ -0.18
COMMD4-225	ENST00000569245		C9J4A7	227 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ZSCAN9	O15535	394 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ZBTB14	O43829	449 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	GLRA3	O75311	464 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	PSIP1	O75475	530 aa	Known RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	FURIN	P09958	794 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ENO3	P13929	434 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ZNF37A	P17032	561 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	PSMB5	P28074	263 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	HPD	P32754	393 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	RPA3	P35244	121 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	RORA	P35398	523 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	PDAP1	Q13442	181 aa	Known RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ZNF460	Q14592	562 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	CYP2A13	Q16696	494 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ZC3H12B	Q5HYM0	836 aa	Known RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	LCN10	Q6JVE6	187 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	SYVN1	Q86TM6	617 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	SPNS2	Q8IVW8	549 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	CPNE9	Q8IYJ1	553 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ARFGAP2	Q8N6H7	521 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ENDOV	Q8N8Q3	282 aa	Known RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	HMGCLL1	Q8TB92	370 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	CD200R1	Q8TD46	325 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	DENND1A	Q8TEH3	1009 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ZUFSP	Q96AP4	578 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	UBXN10	Q96LJ8	280 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	DPH2	Q9BQC3	489 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	NDC1	Q9BTX1	674 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ACAT2	Q9BWD1	397 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ADNP	Q9H2P0	1102 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	ABCF3	Q9NUQ8	709 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	GPN3	Q9UHW5	284 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	SNX7	Q9UNH6	387 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	MAN2B2	Q9Y2E5	1009 aa		13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	HEMK1	Q9Y5R4	338 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD4-225	ENST00000569245	TMEM120B	A0PK00	339 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	ZNF839	A8K0R7	811 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245		B8ZZF3	427 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	MYO1C	O00159	1063 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	EIF3F	O00303	357 aa	Predicted RBP	13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	TM9SF1	O15321	606 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	SPAG7	O75391	227 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	KLHL2	O95198	593 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	ZWINT	O95229	277 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	FKBP9	O95302	570 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	RECK	O95980	971 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	CTSB	P07858	339 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	RAB40AL	P0C0E4	278 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	MPC1L	P0DKB6	136 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	CBSL	P0DN79	551 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	ALAS2	P22557	587 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	CBS	P35520	551 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	HSD17B2	P37059	387 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	GABRA4	P48169	554 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	PGGT1B	P53609	377 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	MPP2	Q14168	576 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	FASTK	Q14296	549 aa	Known RBP	13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	MLIP	Q5VWP3	458 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	FCRL6	Q6DN72	434 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	PAQR3	Q6TCH7	311 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	SUSD1	Q6UWL2	747 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	TMEM207	Q6UWW9	146 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	ZNF517	Q6ZMY9	492 aa	Predicted RBP	13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	UBE2R2	Q712K3	238 aa	Predicted RBP	13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	PIWIL4	Q7Z3Z4	852 aa	Known RBP	13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	TBC1D1	Q86TI0	1168 aa	Predicted RBP	13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	CENPL	Q8N0S6	344 aa	Predicted RBP	13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	PLD6	Q8N2A8	252 aa	Known RBP	13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	NKAP	Q8N5F7	415 aa	Known RBP	13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	OR2L3	Q8NG85	312 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	FAM76A	Q8TAV0	307 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	ASB11	Q8WXH4	323 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	SMPDL3A	Q92484	453 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	PDLIM5	Q96HC4	596 aa	Known RBP	13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	PKP4	Q99569	1192 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	SELENOS	Q9BQE4	189 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	NLN	Q9BYT8	704 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	SLC25A18	Q9H1K4	315 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	CNOT10	Q9H9A5	744 aa	Known RBP	13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	KCNK9	Q9NPC2	374 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	GRID1	Q9ULK0	1009 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	SRPK3	Q9UPE1	567 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	PLLP	Q9Y342	182 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	KCNMB2	Q9Y691	235 aa		13.88	□□□□□ -0.19
COMMD4-225	ENST00000569245	TARM1	B6A8C7	271 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms