RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 MINDY1Q8N5J2 469 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 OR10S1Q8NGN2 331 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 OR10G7Q8NGN6 311 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 PRPF31Q8WWY3 499 aaKnown RBP2.31□□□□□ -2.04
VPS35-207ENST00000568191 PIGBQ92521 554 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 ZNF622Q969S3 477 aaKnown RBP eCLIP2.31□□□□□ -2.04
VPS35-207ENST00000568191 PTERQ96BW5 349 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 OVOL2Q9BRP0 275 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 UBAC1Q9BSL1 405 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 CENPOQ9BU64 300 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 MAF1Q9H063 256 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 PNNQ9H307 717 aaKnown RBP2.31□□□□□ -2.04
VPS35-207ENST00000568191 GOLPH3LQ9H4A5 285 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 TBC1D22BQ9NU19 505 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 VPS28Q9UK41 221 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 PRDM4Q9UKN5 801 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 ELF5Q9UKW6 265 aaPredicted RBP2.31□□□□□ -2.04
VPS35-207ENST00000568191 TMEM5Q9Y2B1 443 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 ZNF318Q5VUA4 2279 aa2.31□□□□□ -2.04
VPS35-207ENST00000568191 KAT6BQ8WYB5 2073 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 PHOX2AO14813 284 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 SURF4O15260 269 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 GALR3O60755 368 aaPredicted RBP2.3□□□□□ -2.04
VPS35-207ENST00000568191 SAGP10523 405 aaPredicted RBP2.3□□□□□ -2.04
VPS35-207ENST00000568191 MYL6BP14649 208 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 ALOX12P18054 663 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 EEF1B2P24534 225 aaKnown RBP2.3□□□□□ -2.04
VPS35-207ENST00000568191 OR3A2P47893 321 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 MAPK12P53778 367 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 CUL3Q13618 768 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 BAATQ14032 418 aaPredicted RBP2.3□□□□□ -2.04
VPS35-207ENST00000568191 VEZF1Q14119 521 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 OPCMLQ14982 345 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 PRR27Q6MZM9 219 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 VITQ6UXI7 678 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 C3P1Q6ZMU1 363 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 NUP54Q7Z3B4 507 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 FGFRL1Q8N441 504 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 OR52B6Q8NGF0 335 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 SLC22A18Q96BI1 424 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 MOB3AQ96BX8 217 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 NXNL1Q96CM4 212 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 ZNF597Q96LX8 424 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 MAP3K3Q99759 626 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 RBM24Q9BX46 236 aaKnown RBP2.3□□□□□ -2.04
VPS35-207ENST00000568191 GNB4Q9HAV0 340 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 Q9N2K0 584 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 PDE7BQ9NP56 450 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 PIH1D3Q9NQM4 214 aaKnown RBP2.3□□□□□ -2.04
VPS35-207ENST00000568191 SLC35C2Q9NQQ7 365 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 MRPL15Q9P015 296 aaKnown RBP2.3□□□□□ -2.04
VPS35-207ENST00000568191 BAIAP2L1Q9UHR4 511 aa2.3□□□□□ -2.04
VPS35-207ENST00000568191 IGLV4-3A0A075B6K6 122 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 IGKV6D-21A0A0A0MT36 114 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 K7EQD1 137 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 ADAM20O43506 726 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 SNX3O60493 162 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 RPS6KA5O75582 802 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 MELTFP08582 738 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 RAB40ALP0C0E4 278 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 KRTAP1-4P0C5Y4 121 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 AOC1P19801 751 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 ASCL1P50553 236 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 CD300CQ08708 224 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 ITGA7Q13683 1181 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 LCE3EQ5T5B0 92 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 CTR9Q6PD62 1173 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 FAM198BQ6UWH4 519 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 BAIAP2L2Q6UXY1 529 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 DET1Q7L5Y6 550 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 CEACAM19Q7Z692 300 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 DNAAF5Q86Y56 855 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 SYT2Q8N9I0 419 aaPredicted RBP2.29□□□□□ -2.04
VPS35-207ENST00000568191 SUMF1Q8NBK3 374 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 RHOXF1Q8NHV9 184 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 NSUN4Q96CB9 384 aaKnown RBP2.29□□□□□ -2.04
VPS35-207ENST00000568191 CNRIP1Q96F85 164 aaPredicted RBP2.29□□□□□ -2.04
VPS35-207ENST00000568191 FAM71F1Q96KD3 344 aaPredicted RBP2.29□□□□□ -2.04
VPS35-207ENST00000568191 CDCA3Q99618 268 aaPredicted RBP2.29□□□□□ -2.04
VPS35-207ENST00000568191 PARLQ9H300 379 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 JPT2Q9H910 190 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.29□□□□□ -2.04
VPS35-207ENST00000568191 NLGN3Q9NZ94 848 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 GDE1Q9NZC3 331 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 CPSF2Q9P2I0 782 aaKnown RBP2.29□□□□□ -2.04
VPS35-207ENST00000568191 TSPAN16Q9UKR8 245 aa2.29□□□□□ -2.04
VPS35-207ENST00000568191 ZNF646O15015 1829 aaPredicted RBP2.28□□□□□ -2.04
VPS35-207ENST00000568191 TRBV4-1A0A0J9YWV2 114 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 FPGTO14772 594 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 SPRY1O43609 319 aaPredicted RBP2.28□□□□□ -2.04
VPS35-207ENST00000568191 MTRF1O75570 445 aaKnown RBP2.28□□□□□ -2.04
VPS35-207ENST00000568191 BEST1O76090 585 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 ATP1B1P05026 303 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 FOLR2P14207 255 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 CYP11B2P19099 503 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 MPZP25189 248 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 PKLRP30613 574 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 EIF2DP41214 584 aaKnown RBP2.28□□□□□ -2.04
VPS35-207ENST00000568191 RPL34P49207 117 aaKnown RBP2.28□□□□□ -2.04
VPS35-207ENST00000568191 LIG4P49917 911 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms