RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 UBOX5O94941 541 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 PRR35P0CG20 571 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 HMGCS1Q01581 520 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 ATP6AP1LQ52LC2 224 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 ADNP2Q6IQ32 1131 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 KRT78Q8N1N4 520 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 RNF175Q8N4F7 328 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 AIF1LQ9BQI0 150 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 ACPTQ9BZG2 426 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 TWSG1Q9GZX9 223 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 IL21RQ9HBE5 538 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 PRM3Q9NNZ6 103 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 SLC6A20Q9NP91 592 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 CCL27Q9Y4X3 112 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 IGKV1-8A0A0C4DH67 115 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 EPN2O95208 641 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 NUBP1P53384 320 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 REEP5Q00765 189 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 SLC23A3Q6PIS1 610 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 CHSY3Q70JA7 882 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 ADCK2Q7Z695 626 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 LAS2Q8IYD9 372 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 ZNF740Q8NDX6 193 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 UBE2E3Q969T4 207 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 MTERF1Q99551 399 aaKnown RBP29.41■■■□□ 2.3
CTCF-203ENST00000566078 GAREM1Q9H706 876 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 ACTR10Q9NZ32 417 aa29.41■■■□□ 2.3
CTCF-203ENST00000566078 DMDP11532 3685 aa29.4■■■□□ 2.3
CTCF-203ENST00000566078 LSM1O15116 133 aaKnown RBP29.4■■■□□ 2.3
CTCF-203ENST00000566078 GIMD1P0DJR0 217 aa29.4■■■□□ 2.3
CTCF-203ENST00000566078 ZNF33BQ06732 778 aa29.4■■■□□ 2.3
CTCF-203ENST00000566078 CSTF3Q12996 717 aaKnown RBP29.4■■■□□ 2.3
CTCF-203ENST00000566078 CCDC121Q6ZUS5 278 aa29.4■■■□□ 2.3
CTCF-203ENST00000566078 OOSP2Q86WS3 158 aa29.4■■■□□ 2.3
CTCF-203ENST00000566078 GATAD2AQ86YP4 633 aa29.4■■■□□ 2.3
CTCF-203ENST00000566078 GBP7Q8N8V2 638 aaPredicted RBP29.4■■■□□ 2.3
CTCF-203ENST00000566078 ZNF385DQ9H6B1 395 aa29.4■■■□□ 2.3
CTCF-203ENST00000566078 UCK1Q9HA47 277 aa29.4■■■□□ 2.3
CTCF-203ENST00000566078 SERTM1A2A2V5 107 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 YKT6O15498 198 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 DFNA5O60443 496 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 ALDOCP09972 364 aaKnown RBP29.39■■■□□ 2.3
CTCF-203ENST00000566078 UGT2B7P16662 529 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 CXCR2P25025 360 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 CSNK1G2P78368 415 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 KIAA1614Q5VZ46 1190 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 TMIGD1Q6UXZ0 262 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 KANSL1Q7Z3B3 1105 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 ARL10Q8N8L6 244 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 OR4K1Q8NGD4 311 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 HUS1BQ8NHY5 278 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 FLVCR1-AS1Q8TAF5 88 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 PPP3R2Q96LZ3 170 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 OR2A14Q96R47 310 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 SLC38A3Q99624 504 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 CCDC106Q9BWC9 280 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 LDHAL6BQ9BYZ2 381 aaPredicted RBP29.39■■■□□ 2.3
CTCF-203ENST00000566078 HRASLS2Q9NWW9 162 aa29.39■■■□□ 2.3
CTCF-203ENST00000566078 COPG1Q9Y678 874 aaKnown RBP29.39■■■□□ 2.3
CTCF-203ENST00000566078 C2orf74A8MZ97 194 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 C6orf136Q5SQH8 315 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 FAM91A1Q658Y4 838 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 OGFOD2Q6N063 350 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 LOXL4Q96JB6 756 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 DPH7Q9BTV6 452 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 ENTPD2Q9Y5L3 495 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 OR5K3A6NET4 321 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 LILRA5A6NI73 299 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 TYRP1P17643 537 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 MPLP40238 635 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 ERVK-8P63133 956 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 RBBP5Q15291 538 aaKnown RBP29.38■■■□□ 2.29
CTCF-203ENST00000566078 FNDC5Q8NAU1 212 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 SAP25Q8TEE9 199 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 RSC1A1Q92681 617 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 C1orf50Q9BV19 199 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 ARRDC1-AS1Q9H2J1 176 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 NLGN3Q9NZ94 848 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 RAB23Q9ULC3 237 aa29.38■■■□□ 2.29
CTCF-203ENST00000566078 ARHGAP33O14559 1287 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 CER1O95813 267 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 CCT8P50990 548 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 CCDC6Q16204 474 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 AP5B1Q2VPB7 878 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 C10orf62Q5T681 223 aaPredicted RBP29.37■■■□□ 2.29
CTCF-203ENST00000566078 SPATA19Q7Z5L4 167 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 TRIM73Q86UV7 250 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 TREML1Q86YW5 311 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 SLC35F3Q8IY50 421 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 CPSF7Q8N684 471 aaKnown RBP29.37■■■□□ 2.29
CTCF-203ENST00000566078 SMOC1Q9H4F8 434 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 BRF2Q9HAW0 419 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 LRTM1Q9HBL6 345 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 TMEM184CQ9NVA4 438 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 KLHL20Q9Y2M5 609 aa29.37■■■□□ 2.29
CTCF-203ENST00000566078 FEZF1A0PJY2 475 aa29.36■■■□□ 2.29
CTCF-203ENST00000566078 MAGEB17A8MXT2 336 aa29.36■■■□□ 2.29
CTCF-203ENST00000566078 RSL1D1O76021 490 aaKnown RBP29.36■■■□□ 2.29
CTCF-203ENST00000566078 KIAA0754O94854 1291 aa29.36■■■□□ 2.29
CTCF-203ENST00000566078 UBXN7O94888 489 aa29.36■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms