RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 PRPF4O43172 522 aaKnown RBP eCLIP12.8□□□□□ -0.36
CLK3-213ENST00000563842 ONECUT2O95948 504 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 IGHEP01854 428 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 CTSBP07858 339 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 ANXA5P08758 320 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 STMN1P16949 149 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 FOLR3P41439 243 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 HNMTP50135 292 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 ARF3P61204 181 aaPredicted RBP12.8□□□□□ -0.36
CLK3-213ENST00000563842 RPS15AP62244 130 aaKnown RBP12.8□□□□□ -0.36
CLK3-213ENST00000563842 YBX1P67809 324 aaKnown RBP12.8□□□□□ -0.36
CLK3-213ENST00000563842 CDKL1Q00532 357 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 KCNAB2Q13303 367 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 SSPNQ14714 243 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 KBTBD12Q3ZCT8 623 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 ATP1A1-AS1Q5TC04 95 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 FRMPD2BQ6IN97 320 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 TMEM207Q6UWW9 146 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 FRA10AC1Q70Z53 315 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 APLFQ8IW19 511 aaPredicted RBP12.8□□□□□ -0.36
CLK3-213ENST00000563842 TBC1D19Q8N5T2 526 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 PPM1NQ8N819 430 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 FBF1Q8TES7 1133 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 ALKBH8Q96BT7 664 aaKnown RBP12.8□□□□□ -0.36
CLK3-213ENST00000563842 THAP11Q96EK4 314 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 MVB12AQ96EY5 273 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 CABS1Q96KC9 395 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 SGPP1Q9BX95 441 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 DERL2Q9GZP9 239 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 SLC25A18Q9H1K4 315 aa12.8□□□□□ -0.36
CLK3-213ENST00000563842 MTO1Q9Y2Z2 717 aaKnown RBP12.8□□□□□ -0.36
CLK3-213ENST00000563842 TLN1Q9Y490 2541 aaKnown RBP12.8□□□□□ -0.36
CLK3-213ENST00000563842 LOC105369274A0A096LPK9 316 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 IGKV1-8A0A0C4DH67 115 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 LOC102723532A0A0G2JNH3 316 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 MKRN2OSH3BPM6 223 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 H7BY64 318 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 RFPL1O75677 317 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 PIAS1O75925 651 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 GUCA1CO95843 209 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 PRB1P04280 392 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 FURINP09958 794 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 PMS2P54278 862 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 RRADP55042 308 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 ATP6V0D1P61421 351 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 ZNF460Q14592 562 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 NDUFA9Q16795 377 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 PRTGQ2VWP7 1150 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 MRPL14Q6P1L8 145 aaKnown RBP12.79□□□□□ -0.36
CLK3-213ENST00000563842 SBSNQ6UWP8 590 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 MBOAT1Q6ZNC8 495 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 OVCH1Q7RTY7 1134 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 CCDC91Q7Z6B0 441 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 RELL1Q8IUW5 271 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 SPNS2Q8IVW8 549 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 CEP97Q8IW35 865 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 OR4N4Q8N0Y3 316 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 ZNF843Q8N446 348 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 CSNK1A1LQ8N752 337 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 NOA1Q8NC60 698 aaKnown RBP12.79□□□□□ -0.36
CLK3-213ENST00000563842 OR2Y1Q8NGV0 311 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 OR56A3Q8NH54 315 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 IFT81Q8WYA0 676 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 NACC2Q96BF6 587 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 PTERQ96BW5 349 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 VPS50Q96JG6 964 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 PRAP1Q96NZ9 151 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 OR2A5Q96R48 311 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 FMO2Q99518 471 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 EGFL8Q99944 293 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 WDR54Q9H977 334 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 ZNF304Q9HCX3 659 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 STARD5Q9NSY2 213 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 CUEDC1Q9NWM3 386 aaPredicted RBP12.79□□□□□ -0.36
CLK3-213ENST00000563842 DMGDHQ9UI17 866 aaKnown RBP12.79□□□□□ -0.36
CLK3-213ENST00000563842 NXT1Q9UKK6 140 aaKnown RBP12.79□□□□□ -0.36
CLK3-213ENST00000563842 PTRH2Q9Y3E5 179 aaKnown RBP12.79□□□□□ -0.36
CLK3-213ENST00000563842 OARD1Q9Y530 152 aa12.79□□□□□ -0.36
CLK3-213ENST00000563842 KCNE1BA0A087WTH5 132 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 NPEPPSL1A6NEC2 478 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 CDC7O00311 574 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 HAT1O14929 419 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 KLF7O75840 302 aaPredicted RBP12.78□□□□□ -0.36
CLK3-213ENST00000563842 C1QAP02745 245 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 CCDC166P0CW27 439 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 NPPBP16860 134 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 ITGAXP20702 1163 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 PGGT1BP53609 377 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 RAB10P61026 200 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 IL10RAQ13651 578 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 PPP1R3AQ16821 1122 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 MED25Q71SY5 747 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 TCAIMQ8N3R3 496 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 TMEM102Q8N9M5 508 aaPredicted RBP12.78□□□□□ -0.36
CLK3-213ENST00000563842 C9orf43Q8TAL5 461 aaPredicted RBP12.78□□□□□ -0.36
CLK3-213ENST00000563842 ADAMTS17Q8TE56 1095 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 CYTH2Q99418 400 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 SEMA4CQ9C0C4 833 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 SLC26A1Q9H2B4 701 aa12.78□□□□□ -0.36
CLK3-213ENST00000563842 CAB39LQ9H9S4 337 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms