RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 AIMP2Q13155 320 aaKnown RBP16.06■□□□□ 0.16
CLK3-210ENST00000563112 PDAP1Q13442 181 aaKnown RBP16.06■□□□□ 0.16
CLK3-210ENST00000563112 RBM20Q5T481 1227 aaKnown RBP16.06■□□□□ 0.16
CLK3-210ENST00000563112 TEDDM1Q5T9Z0 273 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 GARNL3Q5VVW2 1013 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 JMJD6Q6NYC1 403 aaPredicted RBP16.06■□□□□ 0.16
CLK3-210ENST00000563112 SHISA6Q6ZSJ9 500 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 SPNS2Q8IVW8 549 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 LRRC56Q8IYG6 542 aaPredicted RBP16.06■□□□□ 0.16
CLK3-210ENST00000563112 GPATCH11Q8N954 259 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 CPT1CQ8TCG5 803 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 STT3BQ8TCJ2 826 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 TM9SF4Q92544 642 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 LINGO1Q96FE5 620 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 OR2A5Q96R48 311 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 TRIM51Q9BSJ1 452 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 CRB3Q9BUF7 120 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 YIPF2Q9BWQ6 316 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 TRIM54Q9BYV2 358 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 TRIM31Q9BZY9 425 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 TMEM184CQ9NVA4 438 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 STOX2Q9P2F5 926 aaPredicted RBP16.06■□□□□ 0.16
CLK3-210ENST00000563112 PYCARDQ9ULZ3 195 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 PDE10AQ9Y233 779 aa16.06■□□□□ 0.16
CLK3-210ENST00000563112 RUVBL1Q9Y265 456 aaKnown RBP16.06■□□□□ 0.16
CLK3-210ENST00000563112 MDC1Q14676 2089 aaKnown RBP16.06■□□□□ 0.16
CLK3-210ENST00000563112 EFCAB8A8MWE9 144 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 H7BY64 318 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 VPS4BO75351 444 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 SEC31AO94979 1220 aaKnown RBP16.05■□□□□ 0.16
CLK3-210ENST00000563112 MED26O95402 600 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 ANXA5P08758 320 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 CCND1P24385 295 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 VARSP26640 1264 aaKnown RBP16.05■□□□□ 0.16
CLK3-210ENST00000563112 CD97P48960 835 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 CDKN2DP55273 166 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 TBPL1P62380 186 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 TIAL1Q01085 375 aaKnown RBP eCLIP16.05■□□□□ 0.162e-7■■■■■ 33.6
CLK3-210ENST00000563112 NDUFA9Q16795 377 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 PRAMEF13Q5VWM6 474 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 FAM45BPQ6NSW5 357 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 BBOF1Q8ND07 529 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 FAM45AQ8TCE6 357 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 PNPLA2Q96AD5 504 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 C10orf90Q96M02 699 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 PWWP2AQ96N64 755 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 PRAP1Q96NZ9 151 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 KRT12Q99456 494 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 CUEDC1Q9NWM3 386 aaPredicted RBP16.05■□□□□ 0.16
CLK3-210ENST00000563112 FBXL4Q9UKA2 621 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 ADAMTS6Q9UKP5 1117 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 VPS4AQ9UN37 437 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 VWA7Q9Y334 891 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 HS3ST3B1Q9Y662 390 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 TEX264Q9Y6I9 313 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 PCSK5Q92824 1860 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 PTPN13Q12923 2485 aa16.05■□□□□ 0.16
CLK3-210ENST00000563112 SOCS6O14544 535 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 HAT1O14929 419 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 SORBS2O94875 1100 aaKnown RBP16.04■□□□□ 0.16
CLK3-210ENST00000563112 ZGLP1P0C6A0 271 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 KLC1Q07866 573 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 PDIA2Q13087 525 aaKnown RBP16.04■□□□□ 0.16
CLK3-210ENST00000563112 FRG1Q14331 258 aaKnown RBP16.04■□□□□ 0.16
CLK3-210ENST00000563112 HKDC1Q2TB90 917 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 TUBB8Q3ZCM7 444 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 HECTD2Q5U5R9 776 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 STEAP4Q687X5 459 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 AGTRAPQ6RW13 159 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 KIRREL2Q6UWL6 708 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 C17orf64Q86WR6 236 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 ANKMY2Q8IV38 441 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 TMEM151BQ8IW70 566 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 PRSS58Q8IYP2 241 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 ZADH2Q8N4Q0 377 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 DTWD1Q8N5C7 304 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 RBMXL3Q8N7X1 1067 aaKnown RBP16.04■□□□□ 0.16
CLK3-210ENST00000563112 ALKBH8Q96BT7 664 aaKnown RBP16.04■□□□□ 0.16
CLK3-210ENST00000563112 MMABQ96EY8 250 aaPredicted RBP16.04■□□□□ 0.16
CLK3-210ENST00000563112 ZNF552Q9H707 407 aaPredicted RBP16.04■□□□□ 0.16
CLK3-210ENST00000563112 ZFATQ9P243 1243 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 SLC17A6Q9P2U8 582 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 TRPC4Q9UBN4 977 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 C3orf18Q9UK00 162 aa16.04■□□□□ 0.16
CLK3-210ENST00000563112 GRK3P35626 688 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 AVPR1BP47901 424 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 RPS15AP62244 130 aaKnown RBP16.03■□□□□ 0.16
CLK3-210ENST00000563112 MGAT5Q09328 741 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 NAE1Q13564 534 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 DSG2Q14126 1118 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 UBAP2LQ14157 1087 aaKnown RBP16.03■□□□□ 0.16
CLK3-210ENST00000563112 INPP5JQ15735 1006 aaPredicted RBP16.03■□□□□ 0.16
CLK3-210ENST00000563112 VWA2Q5GFL6 755 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 SLC6A19Q695T7 634 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 CAPN13Q6MZZ7 669 aaPredicted RBP16.03■□□□□ 0.16
CLK3-210ENST00000563112 TRMT10BQ6PF06 316 aaKnown RBP16.03■□□□□ 0.16
CLK3-210ENST00000563112 IGFL3Q6UXB1 125 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 PLD3Q8IV08 490 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 GALNT11Q8NCW6 608 aa16.03■□□□□ 0.16
CLK3-210ENST00000563112 FBXO36Q8NEA4 188 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms