RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GPR42O15529 346 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 LATO43561 262 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 DEAF1O75398 565 aaPredicted RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 CLEC3AO75596 197 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ABCB1P08183 1280 aaPredicted RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 BMP2P12643 396 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 SDC1P18827 310 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 EPORP19235 508 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ITPKAP23677 461 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 CMPK1P30085 196 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 AHRP35869 848 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 GDF5P43026 501 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 PREPP48147 710 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 HTR6P50406 440 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 RPS6KA3P51812 740 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 POLE2P56282 527 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 SESN3P58005 492 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 TAS2R38P59533 333 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 UFM1P61960 85 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 SKP1P63208 163 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 VAC14Q08AM6 782 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 RBBP4Q09028 425 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ILF3Q12906 894 aaKnown RBP eCLIP7.26□□□□□ -1.25
VPS39-204ENST00000561818 FADDQ13158 208 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 MED21Q13503 144 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 TDGQ13569 410 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 TRIP10Q15642 601 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 DUOXA1Q1HG43 343 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 AAK1Q2M2I8 961 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 INTS11Q5TA45 600 aaKnown RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 OGFRL1Q5TC84 451 aaPredicted RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 CAPRIN2Q6IMN6 1127 aaKnown RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 BHLHB9Q6PI77 547 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 CRTC3Q6UUV7 619 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ABRAXAS1Q6UWZ7 409 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 RFLNAQ6ZTI6 216 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 SYT13Q7L8C5 426 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 C11orf96Q7Z7L8 435 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 IQCHQ86VS3 1027 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ZNF547Q8IVP9 402 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 PGBD3Q8N328 593 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 SLC44A3Q8N4M1 653 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ZNF655Q8N720 491 aaPredicted RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 PNPLA1Q8N8W4 532 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 PAPD5Q8NDF8 572 aaKnown RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 OR2T12Q8NG77 320 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 OR9I1Q8NGQ6 314 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 OR2L8Q8NGY9 312 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 FBXO27Q8NI29 283 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 TMEM125Q96AQ2 219 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 EME1Q96AY2 570 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 PPWD1Q96BP3 646 aaKnown RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 REXO5Q96IC2 774 aaKnown RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 CLPTM1LQ96KA5 538 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 WDR92Q96MX6 357 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 HHIPQ96QV1 700 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 APOOQ9BUR5 198 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 C1orf50Q9BV19 199 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 SARGQ9BW04 601 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 FAIM2Q9BWQ8 316 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 TMEM121BQ9BXQ6 578 aaPredicted RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 ZDHHC5Q9C0B5 715 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ATG10Q9H0Y0 220 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 KCNK12Q9HB15 430 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 MYNNQ9NPC7 610 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 SLC52A3Q9NQ40 469 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 DMRT3Q9NQL9 472 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 CCM2LQ9NUG4 571 aaPredicted RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 POT1Q9NUX5 634 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 OLAHQ9NV23 265 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 EHD3Q9NZN3 535 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 USP36Q9P275 1121 aaKnown RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 MAP10Q9P2G4 905 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ZNHIT2Q9UHR6 403 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 SCOCQ9UIL1 159 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ANAPC2Q9UJX6 822 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 INVSQ9Y283 1065 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 DTNAQ9Y4J8 743 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ASB1Q9Y576 335 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 DGKBQ9Y6T7 804 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 PDE4DIPQ5VU43 2346 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 BPTFQ12830 3046 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 KIR2DS5A0A0G2JLQ3 304 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 A0A0G2JNG1 304 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 GNG14A0A1W2PPG7 69 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 A0A1W2PQF6 199 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 TRBC2A0A5B9 178 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ELOVL7A1L3X0 281 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 PRSS38A1L453 326 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 MAGEA13PA6NCF6 341 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 KIR2DS3K7RE56 304 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 SCAMP2O15127 329 aaKnown RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 PCDH7O60245 1069 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 SOX30O94993 753 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 KRT75O95678 551 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 CAPNS1P04632 268 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ANXA6P08133 673 aa7.25□□□□□ -1.25
VPS39-204ENST00000561818 ANXA4P09525 319 aaPredicted RBP7.25□□□□□ -1.25
VPS39-204ENST00000561818 RAP2AP10114 183 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms