RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SLC23A2Q9UGH3 650 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 TUBD1Q9UJT1 453 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 PSMD13Q9UNM6 376 aa11.39□□□□□ -0.59
LDLR-212ENST00000560467 TRBV23OR9-2A0A075B6M9 112 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 CLEC18AA5D8T8 446 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 A8MT66 165 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 B4E171 279 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 TARM1B6A8C7 271 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 SLCO1B7G3V0H7 640 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 ZW10O43264 779 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 STK16O75716 305 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 CHEK2O96017 543 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 CCND1P24385 295 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 EEF1DP29692 281 aaKnown RBP11.38□□□□□ -0.59
LDLR-212ENST00000560467 PDHA2P29803 388 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 GMPRP36959 345 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 TSPAN7P41732 249 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 PPM1FP49593 454 aaPredicted RBP11.38□□□□□ -0.59
LDLR-212ENST00000560467 HK2P52789 917 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 ABCE1P61221 599 aaKnown RBP11.38□□□□□ -0.59
LDLR-212ENST00000560467 SETDB1Q15047 1291 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 SNAP47Q5SQN1 464 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 ATP1A1-AS1Q5TC04 95 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 SBSNQ6UWP8 590 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 CLEC18BQ6UXF7 455 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 VRK3Q8IV63 474 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 WDR75Q8IWA0 830 aaKnown RBP11.38□□□□□ -0.59
LDLR-212ENST00000560467 SYTL1Q8IYJ3 562 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 BMPERQ8N8U9 685 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 CLEC18CQ8NCF0 446 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 FBXO15Q8NCQ5 510 aaPredicted RBP11.38□□□□□ -0.59
LDLR-212ENST00000560467 ZFPM2Q8WW38 1151 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 CCT6BQ92526 530 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 SH3KBP1Q96B97 665 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 MAGEB10Q96LZ2 347 aaPredicted RBP11.38□□□□□ -0.59
LDLR-212ENST00000560467 MECRQ9BV79 373 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 ASPSCR1Q9BZE9 553 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 FAM107BQ9H098 131 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 OR52A5Q9H2C5 316 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 GPN2Q9H9Y4 310 aaPredicted RBP11.38□□□□□ -0.59
LDLR-212ENST00000560467 PRM3Q9NNZ6 103 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 OPTCQ9UBM4 332 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 PILRAQ9UKJ1 303 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 CDYLQ9Y232 598 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 PDE10AQ9Y233 779 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.38□□□□□ -0.59
LDLR-212ENST00000560467 TDRKHQ9Y2W6 561 aaKnown RBP11.38□□□□□ -0.59
LDLR-212ENST00000560467 TEX15Q9BXT5 2789 aa11.38□□□□□ -0.59
LDLR-212ENST00000560467 ZFC3H1O60293 1989 aaKnown RBP11.37□□□□□ -0.59
LDLR-212ENST00000560467 KIR2DS5A0A0G2JLQ3 304 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 A0A0G2JNG1 304 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 LOC101059948A0A1B0GTJ6 334 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 A8MU76 341 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 KIR2DS3K7RE56 304 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 CCNT2O60583 730 aaKnown RBP11.37□□□□□ -0.59
LDLR-212ENST00000560467 C1orf105O95561 183 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 EML2O95834 649 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 GP1BBP13224 206 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 F3P13726 295 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 EPB42P16452 691 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 KCNC1P48547 511 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 BST1Q10588 318 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 CDC20Q12834 499 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 PRKAA1Q13131 559 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 SQSTM1Q13501 440 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 RCN2Q14257 317 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 KIR2DS5Q14953 304 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 ARHGAP19Q14CB8 494 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 RBBP7Q16576 425 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 DEFB109BQ30KR1 87 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 GLIPR1L2Q4G1C9 344 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 DCAF12Q5T6F0 453 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 THEMIS2Q5TEJ8 643 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 GKAP1Q5VSY0 366 aaPredicted RBP11.37□□□□□ -0.59
LDLR-212ENST00000560467 CAPRIN2Q6IMN6 1127 aaKnown RBP11.37□□□□□ -0.59
LDLR-212ENST00000560467 CAPN13Q6MZZ7 669 aaPredicted RBP11.37□□□□□ -0.59
LDLR-212ENST00000560467 TMEM71Q6P5X7 295 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 ABRAXAS1Q6UWZ7 409 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 FAM83HQ6ZRV2 1179 aaPredicted RBP11.37□□□□□ -0.59
LDLR-212ENST00000560467 SLC9B2Q86UD5 537 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 RBM12BQ8IXT5 1001 aaKnown RBP11.37□□□□□ -0.59
LDLR-212ENST00000560467 TMEM151AQ8N4L1 468 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 ANKS4BQ8N8V4 417 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 SNX31Q8N9S9 440 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 PDPRQ8NCN5 879 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 OR9A1PQ8NGU1 263 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 OR5K2Q8NHB8 316 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 SLC37A2Q8TED4 501 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 L3HYPDHQ96EM0 354 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 RNF31Q96EP0 1072 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 SLC45A3Q96JT2 553 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 FAR2Q96K12 515 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 CATSPER2Q96P56 530 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 HGH1Q9BTY7 390 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 CD244Q9BZW8 370 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 DRC3Q9H069 523 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 PCBD2Q9H0N5 130 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 PRDM8Q9NQV8 689 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 PSD3Q9NYI0 1048 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 ANAPC2Q9UJX6 822 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms