RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 CCDC188H7C350 402 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 I3L1I5 382 aaPredicted RBP11.93□□□□□ -0.5
SMAD3-208ENST00000558827 RAD51CO43502 376 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 CCNDBP1O95273 360 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 FKBP9O95302 570 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 GUCA1CO95843 209 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 PIM1P11309 404 aaPredicted RBP11.93□□□□□ -0.5
SMAD3-208ENST00000558827 FBLP22087 321 aaKnown RBP11.93□□□□□ -0.5
SMAD3-208ENST00000558827 ITGA3P26006 1051 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 HSD17B2P37059 387 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 SKIV2L2P42285 1042 aaKnown RBP11.93□□□□□ -0.5
SMAD3-208ENST00000558827 RRADP55042 308 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 TBPL1P62380 186 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 MAT1AQ00266 395 aaKnown RBP11.93□□□□□ -0.5
SMAD3-208ENST00000558827 MEF2AQ02078 507 aaPredicted RBP11.93□□□□□ -0.5
SMAD3-208ENST00000558827 TRADDQ15628 312 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 RBBP7Q16576 425 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 PRTGQ2VWP7 1150 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 DCAF10Q5QP82 559 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 PRAMEF13Q5VWM6 474 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 STEAP4Q687X5 459 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 AGTRAPQ6RW13 159 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 TMEM207Q6UWW9 146 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 STRA8Q7Z7C7 330 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 CNTN4Q8IWV2 1026 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 ZBED8Q8IZ13 594 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 GALNT16Q8N428 558 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 STT3BQ8TCJ2 826 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 RERGQ96A58 199 aaPredicted RBP11.93□□□□□ -0.5
SMAD3-208ENST00000558827 C8orf44Q96CB5 159 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 MMABQ96EY8 250 aaPredicted RBP11.93□□□□□ -0.5
SMAD3-208ENST00000558827 RUNDC3BQ96NL0 473 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 OR2A5Q96R48 311 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 SPSB2Q99619 263 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 PARVBQ9HBI1 364 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 SAYSD1Q9NPB0 183 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 CCDC177Q9NQR7 707 aaPredicted RBP11.93□□□□□ -0.5
SMAD3-208ENST00000558827 SMYD2Q9NRG4 433 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 ZNF451Q9Y4E5 1061 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 KLK4Q9Y5K2 254 aa11.93□□□□□ -0.5
SMAD3-208ENST00000558827 SOCS6O14544 535 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 CEACAM4O75871 244 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 TSPAN12O95859 305 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 CDH1P12830 882 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 SSTR1P30872 391 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 CD97P48960 835 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 IL2P60568 153 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 FOXK1P85037 733 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 OCA2Q04671 838 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 KLC1Q07866 573 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 MGAT5Q09328 741 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 ZXDCQ2QGD7 858 aaPredicted RBP11.92□□□□□ -0.5
SMAD3-208ENST00000558827 MUM1Q2TAK8 710 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 YOD1Q5VVQ6 348 aaPredicted RBP11.92□□□□□ -0.5
SMAD3-208ENST00000558827 KIRREL2Q6UWL6 708 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 RBMXL3Q8N7X1 1067 aaKnown RBP11.92□□□□□ -0.5
SMAD3-208ENST00000558827 FBXO15Q8NCQ5 510 aaPredicted RBP11.92□□□□□ -0.5
SMAD3-208ENST00000558827 SPATA4Q8NEY3 305 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 GABPB2Q8TAK5 448 aaPredicted RBP11.92□□□□□ -0.5
SMAD3-208ENST00000558827 ZCCHC10Q8TBK6 192 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 MIEF2Q96C03 454 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 FER1L6-AS2Q96M78 137 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 CCDC138Q96M89 665 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 CRB3Q9BUF7 120 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 MLXIPLQ9NP71 852 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 ZFATQ9P243 1243 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 TRPC4Q9UBN4 977 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 PCDHGA9Q9Y5G4 932 aaKnown RBP11.92□□□□□ -0.5
SMAD3-208ENST00000558827 HS3ST3B1Q9Y662 390 aa11.92□□□□□ -0.5
SMAD3-208ENST00000558827 NPEPPSL1A6NEC2 478 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 OR2W5A6NFC9 320 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 CXorf49A8MYA2 514 aaPredicted RBP11.91□□□□□ -0.5
SMAD3-208ENST00000558827 AGPSO00116 658 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 CDC7O00311 574 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 FOXS1O43638 330 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 LCMT2O60294 686 aaKnown RBP11.91□□□□□ -0.5
SMAD3-208ENST00000558827 JRKO75564 520 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 C8GP07360 202 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 HIST1H2AGP0C0S8 130 aaPredicted RBP11.91□□□□□ -0.5
SMAD3-208ENST00000558827 ZGLP1P0C6A0 271 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 HIST1H2ADP20671 130 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 FDXRP22570 491 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 MMP11P24347 488 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 GMPRP36959 345 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 UQCRFS1P47985 274 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 TAS2R39P59534 338 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 CSNK1G2P78368 415 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 ABATP80404 500 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 EEF1A2Q05639 463 aaKnown RBP11.91□□□□□ -0.5
SMAD3-208ENST00000558827 C18orf21Q32NC0 220 aaPredicted RBP11.91□□□□□ -0.5
SMAD3-208ENST00000558827 FAM45BPQ6NSW5 357 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 KIAA0408Q6ZU52 694 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 PRSS41Q7RTY9 318 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 CCDC25Q86WR0 208 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 SPATA6LQ8N4H0 392 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 CLEC1AQ8NC01 280 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 OR9A4Q8NGU2 314 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 FAM45AQ8TCE6 357 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 FKBP10Q96AY3 582 aa11.91□□□□□ -0.5
SMAD3-208ENST00000558827 HIST1H2AHQ96KK5 128 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms