RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ADCK2Q7Z695 626 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 TMPRSS11BQ86T26 416 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 FAM129CQ86XR2 697 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 KMT5CQ86Y97 462 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 SLC22A9Q8IVM8 553 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 GALNT15Q8N3T1 639 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 AGBL5Q8NDL9 886 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 OR4K1Q8NGD4 311 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 OR52B6Q8NGF0 335 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 MGARPQ8TDB4 240 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 PMEPA1Q969W9 287 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 ZUFSPQ96AP4 578 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 RNF31Q96EP0 1072 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 TCTN2Q96GX1 697 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 LIN37Q96GY3 246 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-227ENST00000557269 SELENOSQ9BQE4 189 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 STRADBQ9C0K7 418 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 ACBD3Q9H3P7 528 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 GSTO2Q9H4Y5 243 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 NOL11Q9H8H0 719 aaKnown RBP12.3□□□□□ -0.44
SHMT2-227ENST00000557269 IPPKQ9H8X2 491 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 SEMA4BQ9NPR2 832 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-227ENST00000557269 TMEM184CQ9NVA4 438 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 GPRC5BQ9NZH0 403 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 SNX7Q9UNH6 387 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 LOXL2Q9Y4K0 774 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 CCDC187A0A096LP49 1063 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 LOC105369274A0A096LPK9 316 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 LOC102723532A0A0G2JNH3 316 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 A0A0J9YVX5 310 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 TMX2-CTNND1H3BSU7 103 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 UBFD1O14562 309 aaKnown RBP12.29□□□□□ -0.44
SHMT2-227ENST00000557269 LCMT2O60294 686 aaKnown RBP12.29□□□□□ -0.44
SHMT2-227ENST00000557269 WFS1O76024 890 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 SUPT7LO94864 414 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 STATHP02808 62 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 C1GALT1C1LP0DN25 315 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 EPB42P16452 691 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 GNAZP19086 355 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 MLLT3P42568 568 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-227ENST00000557269 ARL4DP49703 201 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 CCR8P51685 355 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 SLC18A1P54219 525 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 CYP4F3Q08477 520 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 CHIT1Q13231 466 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 CAMK2BQ13554 666 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 DOC2AQ14183 400 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 XKR6Q5GH73 641 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 LIPMQ5VYY2 423 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 ATG9BQ674R7 924 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 FRMPD2BQ6IN97 320 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 METTL2BQ6P1Q9 378 aaKnown RBP12.29□□□□□ -0.44
SHMT2-227ENST00000557269 ATG14Q6ZNE5 492 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 ZCCHC23Q6ZST2 131 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 OR4N4Q8N0Y3 316 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 CCNYL1Q8N7R7 359 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 TRPC4APQ8TEL6 797 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 CCDC126Q96EE4 140 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 CDK15Q96Q40 435 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 CMKLR1Q99788 373 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 CTRCQ99895 268 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 GATA5Q9BWX5 397 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-227ENST00000557269 APMAPQ9HDC9 416 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 PDE7BQ9NP56 450 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 GEMIN8Q9NWZ8 242 aaKnown RBP12.29□□□□□ -0.44
SHMT2-227ENST00000557269 ZNF225Q9UK10 706 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 SATB2Q9UPW6 733 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 ANGPTL3Q9Y5C1 460 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 KIF26BQ2KJY2 2108 aa12.29□□□□□ -0.44
SHMT2-227ENST00000557269 H3BMH7 237 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 PLD2O14939 933 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 CLGNO14967 610 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 TRIM13O60858 407 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 KATNA1O75449 491 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 HRH2P25021 359 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 ARRB2P32121 409 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 BCL6P41182 706 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 ERVPABLB-1P60509 514 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 REEP5Q00765 189 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 MC2RQ01718 297 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 CLCQ05315 142 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 PCDH1Q08174 1060 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 TRAF3Q13114 568 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 E2F2Q14209 437 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 SLBPQ14493 270 aaKnown RBP eCLIP12.28□□□□□ -0.44
SHMT2-227ENST00000557269 C3orf38Q5JPI3 329 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 PRAMEF17Q5VTA0 474 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 ADNP2Q6IQ32 1131 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 FOXR1Q6PIV2 292 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 RNF44Q7L0R7 432 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 MCATQ8IVS2 390 aaKnown RBP12.28□□□□□ -0.44
SHMT2-227ENST00000557269 OR6Y1Q8NGX8 325 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 OR1L3Q8NH93 324 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 GRAMD1AQ96CP6 724 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 ZNF501Q96CX3 271 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-227ENST00000557269 WDR34Q96EX3 536 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 OR2A5Q96R48 311 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 OR6C1Q96RD1 312 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 PAIP2Q9BPZ3 127 aaKnown RBP12.28□□□□□ -0.44
SHMT2-227ENST00000557269 SCNM1Q9BWG6 230 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms