RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 FAM49AQ9H0Q0 323 aaPredicted RBP3.89□□□□□ -1.79
SCFD1-221ENST00000556534 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.89□□□□□ -1.79
SCFD1-221ENST00000556534 POLLQ9UGP5 575 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 PRSS21Q9Y6M0 314 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 H0YAE9 185 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 DKC1O60832 514 aaKnown RBP eCLIP3.88□□□□□ -1.79
SCFD1-221ENST00000556534 MYL7Q01449 175 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 TRIM29Q14134 588 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 ZNF273Q14593 569 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 NONOQ15233 471 aaKnown RBP eCLIP3.88□□□□□ -1.79
SCFD1-221ENST00000556534 CCDC184Q52MB2 194 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 ZNF440Q8IYI8 595 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 FAM9BQ8IZU0 186 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 OR7A2PQ8NGA2 310 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 OR6S1Q8NH40 331 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 MAPK15Q8TD08 544 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 SLCO2A1Q92959 643 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 WBP1Q96G27 269 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 KLHL5Q96PQ7 755 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 SPAG5Q96R06 1193 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 ATOH8Q96SQ7 321 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 NKX3-1Q99801 234 aaPredicted RBP3.88□□□□□ -1.79
SCFD1-221ENST00000556534 PKP2Q99959 881 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 RBM4BQ9BQ04 359 aaKnown RBP3.88□□□□□ -1.79
SCFD1-221ENST00000556534 CABLES2Q9BTV7 478 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 FN3KQ9H479 309 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 XAB2Q9HCS7 855 aaKnown RBP3.88□□□□□ -1.79
SCFD1-221ENST00000556534 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.88□□□□□ -1.79
SCFD1-221ENST00000556534 PANK4Q9NVE7 773 aa3.88□□□□□ -1.79
SCFD1-221ENST00000556534 PENKP01210 267 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-221ENST00000556534 KRT5P13647 590 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 TCF4P15884 667 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 RPL35AP18077 110 aaKnown RBP3.87□□□□□ -1.79
SCFD1-221ENST00000556534 ACAT1P24752 427 aaKnown RBP3.87□□□□□ -1.79
SCFD1-221ENST00000556534 PTAFRP25105 342 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 CDC25CP30307 473 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 ZNF41P51814 821 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-221ENST00000556534 XGP55808 180 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 MTCP1P56278 107 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 HUNKP57058 714 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 ILF2Q12905 390 aaKnown RBP3.87□□□□□ -1.79
SCFD1-221ENST00000556534 MTF1Q14872 753 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 LBHQ53QV2 105 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-221ENST00000556534 WLSQ5T9L3 541 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 LYSMD4Q5XG99 296 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 ZNF772Q68DY9 489 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-221ENST00000556534 ENPP7Q6UWV6 458 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 ERN2Q76MJ5 926 aaKnown RBP3.87□□□□□ -1.79
SCFD1-221ENST00000556534 LRTM2Q8N967 370 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 Q8NFD4 153 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 KIF18AQ8NI77 898 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 TSACCQ96A04 125 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-221ENST00000556534 FAM218AQ96MZ4 157 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 IWS1Q96ST2 819 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 VGLL1Q99990 258 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 TRIM51Q9BSJ1 452 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 PI4K2AQ9BTU6 479 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 KATNB1Q9BVA0 655 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 TRIM15Q9C019 465 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 WWTR1Q9GZV5 400 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 ACTL8Q9H568 366 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 SPHK2Q9NRA0 654 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 PAK5Q9P286 719 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 CFDP1Q9UEE9 299 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-221ENST00000556534 HEG1Q9ULI3 1381 aa3.87□□□□□ -1.79
SCFD1-221ENST00000556534 MYH14Q7Z406 1995 aaKnown RBP3.86□□□□□ -1.79
SCFD1-221ENST00000556534 CRLF1O75462 422 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 SERPING1P05155 500 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 HLA-FP30511 346 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 ALDH1B1P30837 517 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 HSD17B3P37058 310 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 OR3A2P47893 321 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 CYCSP99999 105 aaKnown RBP3.86□□□□□ -1.79
SCFD1-221ENST00000556534 SRSF9Q13242 221 aaKnown RBP eCLIP3.86□□□□□ -1.79
SCFD1-221ENST00000556534 CDH18Q13634 790 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 OPCMLQ14982 345 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 TMEM132DQ14C87 1099 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 FASTKD1Q53R41 847 aaKnown RBP3.86□□□□□ -1.79
SCFD1-221ENST00000556534 ARMC3Q5W041 872 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 TRIM65Q6PJ69 517 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 SUSD1Q6UWL2 747 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 STXBP4Q6ZWJ1 553 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 ANKRD33Q7Z3H0 272 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 ABI3BPQ7Z7G0 1075 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 LRRTM1Q86UE6 522 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 FAM219AQ8IW50 185 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 SEPT1Q8WYJ6 367 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 RADILQ96JH8 1075 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 C2orf48Q96LS8 159 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 BAG1Q99933 345 aaPredicted RBP3.86□□□□□ -1.79
SCFD1-221ENST00000556534 TDRD1Q9BXT4 1180 aaKnown RBP3.86□□□□□ -1.79
SCFD1-221ENST00000556534 NYXQ9GZU5 481 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 RAVER2Q9HCJ3 691 aaKnown RBP3.86□□□□□ -1.79
SCFD1-221ENST00000556534 IGSF1Q8N6C5 1336 aa3.86□□□□□ -1.79
SCFD1-221ENST00000556534 MTMR11A4FU01 709 aa3.85□□□□□ -1.79
SCFD1-221ENST00000556534 MPTX1A8MV57 137 aa3.85□□□□□ -1.79
SCFD1-221ENST00000556534 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.85□□□□□ -1.79
SCFD1-221ENST00000556534 C17orf105B2RV13 164 aa3.85□□□□□ -1.79
SCFD1-221ENST00000556534 SORBS2O94875 1100 aaKnown RBP3.85□□□□□ -1.79
SCFD1-221ENST00000556534 IGHEP01854 428 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms